Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 7 | 0 | 1 | 7.07 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| PGLIAOFN_1 | 663516 | 664430 | EstT | ARO:3007459 | EstT | 99.02 | 99.35 | CP094932.1 |
| PGLIAOFN_1 | 662414 | 663214 | ErmF | ARO:3000498 | ErmF | 97.74 | 100.00 | M17124.1 |
| PGLIAOFN_1 | 661290 | 662204 | EstT | ARO:3007459 | EstT | 99.02 | 99.35 | CP094932.1 |
| PGLIAOFN_1 | 660245 | 661108 | aadS | ARO:3004683 | aadS | 95.82 | 100.00 | M72415.1 |
| PGLIAOFN_1 | 658199 | 659113 | EstT | ARO:3007459 | EstT | 99.02 | 99.35 | CP094932.1 |
| PGLIAOFN_1 | 648722 | 650647 | tet(Q) | ARO:3000191 | tet(Q) | 96.41 | 97.56 | Z21523.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| PGLIAOFN_1 | 662414 | 663214 | erm(F) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.88 | 100.00 | M62487 |
| PGLIAOFN_1 | 648722 | 650647 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 99.84 | 100.00 | L33696 |
| PGLIAOFN_1 | 1225902 | 1226852 | cfxA3 | Ampicillin | 86.01 | 98.34 | AF472622 |
| PGLIAOFN_1 | 1225902 | 1226852 | cfxA4 | Unknown Beta-lactam | 86.01 | 98.34 | AY769933 |
| PGLIAOFN_1 | 1225902 | 1226852 | cfxA5 | Unknown Beta-lactam | 86.01 | 98.34 | AY769934 |
| PGLIAOFN_1 | 1225902 | 1226852 | cfxA | Cefoxitin, Ampicillin | 86.01 | 98.34 | U38243 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| PGLIAOFN_1 | 662417 | 663214 | erm(F) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(F) | BLASTX | 99.62 | 100.00 | WP_063844771.1 |
| PGLIAOFN_1 | 648722 | 650644 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 99.53 | 100.00 | WP_063856407.1 |
| PGLIAOFN_1 | 658271 | 659110 | estT | macrolide hydrolase EstT | BLASTX | 98.94 | 100.00 | WP_185148407.1 |
| PGLIAOFN_1 | 661362 | 662201 | estT | macrolide hydrolase EstT | BLASTX | 98.94 | 100.00 | WP_185148407.1 |
| PGLIAOFN_1 | 663588 | 664427 | estT | macrolide hydrolase EstT | BLASTX | 98.94 | 100.00 | WP_185148407.1 |
| PGLIAOFN_1 | 660245 | 661105 | aadS | aminoglycoside 6-adenylyltransferase AadS | BLASTX | 95.82 | 100.00 | WP_003013318.1 |
| PGLIAOFN_1 | 1225900 | 1226853 | cfxA | CfxA family broad-spectrum class A beta-lactamase | BLASTX | 83.65 | 99.07 | WP_004339683.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| PGLIAOFN_1 | 3867089 | 3865509 | GroEL | 0.0 | folding of newly synthesized proteins, preventing misfolding and aggregation | 87.29 | 96.70 | BAA04222 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| PGLIAOFN_1 | 0.0 | 1.0 | 0.0 |
| PGLIAOFN_2 | 1.0 | 0.0 | 1.0 |
| PGLIAOFN_3 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| PGLIAOFN_1 | 138418 | 148192 | True | Myoviridae | VOG8253, |
Phigaro v2.4.0 (Database: Jan. 2024 release)