Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 13 | 10 | 7 | 17.83 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| JKKGDCEI_8 | 616839 | 617693 | aadK | ARO:3002627 | aadK | 98.59 | 100.00 | AL009126.1 |
| JKKGDCEI_8 | 598150 | 599352 | blt | ARO:3003006 | blt | 99.75 | 100.00 | L32599.1 |
| JKKGDCEI_7 | 426499 | 426816 | ykkD | ARO:3003064 | ykkD | 99.05 | 100.00 | AL009126.1 |
| JKKGDCEI_7 | 426161 | 426499 | ykkC | ARO:3003063 | ykkC | 100.00 | 100.00 | AL009126.1 |
| JKKGDCEI_8 | 367896 | 369065 | bmr | ARO:3003007 | bmr | 99.74 | 100.00 | M33768.1 |
| JKKGDCEI_1 | 344366 | 345286 | mphK | ARO:3004541 | mphK | 99.02 | 100.00 | CP010314.1 |
| JKKGDCEI_1 | 331031 | 332470 | lmrB | ARO:3002813 | lmrB | 99.16 | 100.42 | JYFL01000006.1 |
| JKKGDCEI_1 | 281315 | 281908 | tmrB | ARO:3003059 | tmrB | 98.48 | 100.00 | AL009126.3 |
| JKKGDCEI_1 | 28897 | 30540 | vmlR | ARO:3004476 | vmlR | 98.90 | 100.00 | NC_000964.3 |
| JKKGDCEI_9 | 27227 | 29797 | Bacillus subtilis mprF | ARO:3003324 | Bsub_mprF | 99.88 | 100.00 | AL009126.3 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| JKKGDCEI_8 | 616841 | 617693 | aadK | Streptomycin | 99.30 | 99.77 | M26879 |
| JKKGDCEI_10 | 36258 | 37634 | tet(L) | Doxycycline, Tetracycline, Minocycline, Tigecycline, Doxycycline, Tetracycline | 98.91 | 100.00 | X08034 |
| JKKGDCEI_1 | 344366 | 345286 | mph(K) | Spiramycin, Telithromycin | 98.05 | 100.00 | NC_000964 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| JKKGDCEI_1 | 344369 | 345286 | mphK | macrolide 2'-phosphotransferase MphK | BLASTX | 99.02 | 100.00 | WP_003246254.1 |
| JKKGDCEI_1 | 28897 | 30537 | vmlR | ABC-F type ribosomal protection protein VmlR | BLASTX | 98.90 | 100.00 | WP_003234144.1 |
| JKKGDCEI_10 | 36258 | 37631 | tet(L) | tetracycline efflux MFS transporter Tet(L) | BLASTX | 98.69 | 100.00 | WP_003242953.1 |
| JKKGDCEI_8 | 616842 | 617693 | aadK | aminoglycoside 6-adenylyltransferase AadK | BLASTX | 98.59 | 100.00 | WP_003229862.1 |
| JKKGDCEI_10 | 39587 | 40105 | satA | streptothricin N-acetyltransferase SatA | BLASTX | 90.17 | 100.00 | WP_003242546.1 |
| JKKGDCEI_8 | 60491 | 63088 | rphC | rifamycin-inactivating phosphotransferase RphC | BLASTX | 81.17 | 100.00 | WP_087347987.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| JKKGDCEI_10 | 963120 | 964058 | dhbB | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 99.68 | 100.00 | NP_391077 |
| JKKGDCEI_10 | 544443 | 545624 | capB | 0.0 | Capsule | Immune modulation | 99.58 | 100.00 | NP_391471 |
| JKKGDCEI_10 | 960248 | 961444 | dhbC | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 99.58 | 100.00 | NP_391079 |
| JKKGDCEI_10 | 964078 | 971214 | dhbF | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 99.58 | 100.00 | NP_391076 |
| JKKGDCEI_10 | 546107 | 547249 | capA | 0.0 | Capsule | Immune modulation | 99.39 | 100.00 | NP_391469 |
| JKKGDCEI_8 | 168493 | 169134 | hlyIII | 0.0 | Hemolysin III | Exotoxin | 99.38 | 100.00 | NP_390062 |
| JKKGDCEI_10 | 959437 | 960222 | dhbA | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 99.36 | 100.00 | NP_391080 |
| JKKGDCEI_10 | 545639 | 546088 | capC | 0.0 | Capsule | Immune modulation | 99.33 | 100.00 | NP_391470 |
| JKKGDCEI_8 | 10499 | 12262 | dep/capD | 0.0 | Capsule | Immune modulation | 98.87 | 100.00 | NP_389723 |
| JKKGDCEI_10 | 961473 | 963092 | dhbE | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 98.33 | 100.00 | NP_391078 |
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| JKKGDCEI_11 | 31680 | 32816 | tufA | 0.0 | elongation factor Tu | 84.96 | 95.69 | AHM69299 |
| JKKGDCEI_13 | 11169 | 10300 | pdxS | 1.10e-151 | encodes the putative pyridoxal 5'-phosphate synthase subunit PdxS | 83.79 | 98.31 | ACE61268 |
| JKKGDCEI_7 | 736613 | 737389 | CodY | 8.35e-125 | nutrient-responsive regulator | 81.08 | 100.00 | ACJ80679 |
| JKKGDCEI_10 | 707796 | 707227 | ClpP | 6.45e-99 | part of proteolytic complex | 81.05 | 97.44 | BAB94595 |
| JKKGDCEI_7 | 276376 | 276768 | spxA1 | 6.56e-70 | redox-responsive transcription factor | 83.97 | 100.00 | AAF21893 |
| JKKGDCEI_7 | 276376 | 276768 | spx | 3.91e-68 | essential gene which is a thiol/oxidative stress sensor | 80.15 | 100.00 | BAB57159 |
| JKKGDCEI_14 | 20585 | 20827 | SpoVG | 7.50e-39 | RNA-binding protein | 81.48 | 79.41 | AAT02994 |
| JKKGDCEI_1 | 78927 | 78730 | CspA | 1.88e-31 | cold shock protein | 90.91 | 100.00 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| JKKGDCEI_1 | 0.0 | 1.0 | 0.0 |
| JKKGDCEI_3 | 0.0 | 1.0 | 0.0 |
| JKKGDCEI_7 | 0.0 | 1.0 | 0.0 |
| JKKGDCEI_8 | 0.0 | 1.0 | 0.0 |
| JKKGDCEI_9 | 0.0 | 1.0 | 0.0 |
| JKKGDCEI_10 | 0.0 | 1.0 | 0.0 |
| JKKGDCEI_11 | 0.0 | 1.0 | 0.0 |
| JKKGDCEI_12 | 0.0 | 1.0 | 0.0 |
| JKKGDCEI_13 | 0.0 | 1.0 | 0.0 |
| JKKGDCEI_14 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| JKKGDCEI_7 | 370230 | 396360 | False | Myoviridae | VOG4602, VOG9667, VOG3490, VOG0189, VOG4861, VOG5447, VOG0796, VOG10227, VOG4773, VOG4685, VOG0749, VOG3890, VOG3891, VOG3892, VOG6163, VOG4865, VOG4885, VOG3894, VOG4550, VOG4691, VOG4862, VOG7718, VOG4705 |
| JKKGDCEI_8 | 547074 | 569471 | False | Myoviridae | VOG7718, VOG4862, VOG4691, VOG4550, VOG3894, VOG4885, VOG4865, VOG6163, VOG3892, VOG3891, VOG3890, VOG10055, VOG4870, VOG4589, VOG0749, VOG4685, VOG4688, VOG4773 |
Phigaro v2.4.0 (Database: Jan. 2024 release)