Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 2 | 0 | 1 | 2.24 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| EICGAPJK_46 | 3011 | 3871 | TEM-116 | ARO:3000979 | TEM-116 | 100.00 | 100.00 | U36911.1 |
| EICGAPJK_46 | 1789 | 2523 | ErmG | ARO:3000522 | ErmG | 99.59 | 100.00 | L42817.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| EICGAPJK_46 | 3011 | 3871 | blaTEM-116 | Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin | 100.00 | 100.00 | AY425988 |
| EICGAPJK_46 | 1789 | 2523 | erm(G) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.73 | 100.00 | L42817 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| EICGAPJK_46 | 3011 | 3868 | blaTEM-116 | broad-spectrum class A beta-lactamase TEM-116 | ALLELEX | 100.00 | 100.00 | WP_000027050.1 |
| EICGAPJK_46 | 1792 | 2523 | erm(G) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(G) | BLASTX | 99.59 | 100.00 | WP_063844787.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| EICGAPJK_43 | 4921 | 818 | cas9 | 0.0 | CRISPR-associated endonuclease | 100.00 | 100.00 | AAK33936 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| EICGAPJK_1 | 0.0 | 1.0 | 0.0 |
| EICGAPJK_2 | 0.0 | 1.0 | 0.0 |
| EICGAPJK_3 | 0.0 | 1.0 | 0.0 |
| EICGAPJK_4 | 0.0 | 1.0 | 0.0 |
| EICGAPJK_5 | 0.0 | 1.0 | 0.0 |
| EICGAPJK_6 | 0.0 | 1.0 | 0.0 |
| EICGAPJK_7 | 0.0 | 1.0 | 0.0 |
| EICGAPJK_8 | 0.0 | 1.0 | 0.0 |
| EICGAPJK_9 | 0.0 | 1.0 | 0.0 |
| EICGAPJK_10 | 0.0 | 1.0 | 0.0 |
| EICGAPJK_11 | 0.0 | 1.0 | 0.0 |
| EICGAPJK_12 | 0.0 | 1.0 | 0.0 |
| EICGAPJK_13 | 0.0 | 1.0 | 0.0 |
| EICGAPJK_14 | 0.0 | 1.0 | 0.0 |
| EICGAPJK_15 | 0.0 | 1.0 | 0.0 |
| EICGAPJK_16 | 0.0 | 1.0 | 0.0 |
| EICGAPJK_17 | 0.0 | 1.0 | 0.0 |
| EICGAPJK_18 | 0.0 | 1.0 | 0.0 |
| EICGAPJK_19 | 0.0 | 1.0 | 0.0 |
| EICGAPJK_20 | 0.0 | 1.0 | 0.0 |
| EICGAPJK_21 | 0.0 | 1.0 | 0.0 |
| EICGAPJK_22 | 0.0 | 1.0 | 0.0 |
| EICGAPJK_23 | 0.0 | 1.0 | 0.0 |
| EICGAPJK_24 | 0.0 | 1.0 | 0.0 |
| EICGAPJK_25 | 0.0 | 1.0 | 0.0 |
| EICGAPJK_26 | 0.0 | 1.0 | 0.0 |
| EICGAPJK_27 | 0.0 | 1.0 | 0.0 |
| EICGAPJK_28 | 0.0 | 1.0 | 0.0 |
| EICGAPJK_29 | 0.0 | 1.0 | 0.0 |
| EICGAPJK_30 | 0.0 | 1.0 | 0.0 |
| EICGAPJK_31 | 0.0 | 1.0 | 0.0 |
| EICGAPJK_32 | 0.0 | 1.0 | 0.0 |
| EICGAPJK_33 | 0.0 | 1.0 | 0.0 |
| EICGAPJK_34 | 0.0 | 1.0 | 0.0 |
| EICGAPJK_35 | 0.0 | 1.0 | 0.0 |
| EICGAPJK_36 | 0.0 | 1.0 | 0.0 |
| EICGAPJK_37 | 1.0 | 0.0 | 1.0 |
| EICGAPJK_38 | 0.0 | 1.0 | 0.0 |
| EICGAPJK_39 | 0.0 | 1.0 | 0.0 |
| EICGAPJK_40 | 0.0 | 1.0 | 0.0 |
| EICGAPJK_41 | 0.0 | 1.0 | 0.0 |
| EICGAPJK_42 | 0.0 | 1.0 | 0.0 |
| EICGAPJK_43 | 1.0 | 0.0 | 1.0 |
| EICGAPJK_44 | 0.0 | 1.0 | 0.0 |
| EICGAPJK_45 | 1.0 | 0.0 | 1.0 |
| EICGAPJK_46 | 1.0 | 0.0 | 1.0 |
| EICGAPJK_47 | 1.0 | 0.0 | 1.0 |
| EICGAPJK_48 | 0.0 | 1.0 | 0.0 |
| EICGAPJK_50 | 1.0 | 0.0 | 1.0 |
| EICGAPJK_51 | 0.0 | 1.0 | 0.0 |
| EICGAPJK_52 | 1.0 | 0.0 | 1.0 |
| EICGAPJK_53 | 1.0 | 0.0 | 1.0 |
| EICGAPJK_54 | 1.0 | 0.0 | 1.0 |
| EICGAPJK_55 | 0.0 | 1.0 | 0.0 |
| EICGAPJK_56 | 1.0 | 0.0 | 1.0 |
| EICGAPJK_58 | 0.0 | 1.0 | 0.0 |
| EICGAPJK_61 | 0.0 | 1.0 | 0.0 |
| EICGAPJK_66 | 0.0 | 1.0 | 0.0 |
| EICGAPJK_77 | 0.0 | 1.0 | 0.0 |
| EICGAPJK_88 | 0.0 | 1.0 | 0.0 |
| EICGAPJK_96 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| No hit found | |||||
Phigaro v2.4.0 (Database: Jan. 2024 release)