Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 2 | 0 | 0 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| OMCAAFAD_4 | 27107 | 27967 | TEM-116 | ARO:3000979 | TEM-116 | 100.00 | 100.00 | U36911.1 |
| OMCAAFAD_4 | 25885 | 26619 | ErmG | ARO:3000522 | ErmG | 99.59 | 100.00 | L42817.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| OMCAAFAD_4 | 27107 | 27967 | blaTEM-116 | Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin | 100.00 | 100.00 | AY425988 |
| OMCAAFAD_4 | 25885 | 26619 | erm(G) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.73 | 100.00 | L42817 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| OMCAAFAD_4 | 27107 | 27964 | blaTEM-116 | broad-spectrum class A beta-lactamase TEM-116 | ALLELEX | 100.00 | 100.00 | WP_000027050.1 |
| OMCAAFAD_4 | 25888 | 26619 | erm(G) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(G) | BLASTX | 99.59 | 100.00 | WP_063844787.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| OMCAAFAD_1 | 0.0 | 1.0 | 0.0 |
| OMCAAFAD_2 | 0.0 | 1.0 | 0.0 |
| OMCAAFAD_3 | 0.0 | 1.0 | 0.0 |
| OMCAAFAD_4 | 0.0 | 1.0 | 0.0 |
| OMCAAFAD_5 | 0.0 | 1.0 | 0.0 |
| OMCAAFAD_6 | 0.0 | 1.0 | 0.0 |
| OMCAAFAD_7 | 0.0 | 1.0 | 0.0 |
| OMCAAFAD_8 | 0.0 | 1.0 | 0.0 |
| OMCAAFAD_9 | 0.0 | 1.0 | 0.0 |
| OMCAAFAD_10 | 0.0 | 1.0 | 0.0 |
| OMCAAFAD_11 | 0.0 | 1.0 | 0.0 |
| OMCAAFAD_12 | 0.0 | 1.0 | 0.0 |
| OMCAAFAD_13 | 0.0 | 1.0 | 0.0 |
| OMCAAFAD_14 | 0.0 | 1.0 | 0.0 |
| OMCAAFAD_15 | 0.0 | 1.0 | 0.0 |
| OMCAAFAD_16 | 0.0 | 1.0 | 0.0 |
| OMCAAFAD_17 | 0.0 | 1.0 | 0.0 |
| OMCAAFAD_18 | 0.0 | 1.0 | 0.0 |
| OMCAAFAD_19 | 0.0 | 1.0 | 0.0 |
| OMCAAFAD_20 | 0.0 | 1.0 | 0.0 |
| OMCAAFAD_21 | 0.0 | 1.0 | 0.0 |
| OMCAAFAD_22 | 0.0 | 1.0 | 0.0 |
| OMCAAFAD_23 | 0.0 | 1.0 | 0.0 |
| OMCAAFAD_24 | 0.0 | 1.0 | 0.0 |
| OMCAAFAD_25 | 0.0 | 1.0 | 0.0 |
| OMCAAFAD_26 | 0.0 | 1.0 | 0.0 |
| OMCAAFAD_27 | 0.0 | 1.0 | 0.0 |
| OMCAAFAD_28 | 0.0 | 1.0 | 0.0 |
| OMCAAFAD_29 | 0.0 | 1.0 | 0.0 |
| OMCAAFAD_30 | 0.0 | 1.0 | 0.0 |
| OMCAAFAD_31 | 0.0 | 1.0 | 0.0 |
| OMCAAFAD_32 | 0.0 | 1.0 | 0.0 |
| OMCAAFAD_33 | 0.0 | 1.0 | 0.0 |
| OMCAAFAD_34 | 0.0 | 1.0 | 0.0 |
| OMCAAFAD_35 | 0.0 | 1.0 | 0.0 |
| OMCAAFAD_36 | 0.0 | 1.0 | 0.0 |
| OMCAAFAD_37 | 1.0 | 0.0 | 1.0 |
| OMCAAFAD_38 | 1.0 | 0.0 | 1.0 |
| OMCAAFAD_39 | 0.0 | 1.0 | 0.0 |
| OMCAAFAD_40 | 0.0 | 1.0 | 0.0 |
| OMCAAFAD_41 | 0.0 | 1.0 | 0.0 |
| OMCAAFAD_42 | 0.0 | 1.0 | 0.0 |
| OMCAAFAD_43 | 1.0 | 0.0 | 1.0 |
| OMCAAFAD_44 | 0.0 | 1.0 | 0.0 |
| OMCAAFAD_45 | 0.0 | 1.0 | 0.0 |
| OMCAAFAD_46 | 1.0 | 0.0 | 1.0 |
| OMCAAFAD_48 | 1.0 | 0.0 | 1.0 |
| OMCAAFAD_49 | 0.0 | 1.0 | 0.0 |
| OMCAAFAD_50 | 1.0 | 0.0 | 1.0 |
| OMCAAFAD_51 | 1.0 | 0.0 | 1.0 |
| OMCAAFAD_52 | 1.0 | 0.0 | 1.0 |
| OMCAAFAD_53 | 1.0 | 0.0 | 1.0 |
| OMCAAFAD_55 | 0.0 | 1.0 | 0.0 |
| OMCAAFAD_56 | 0.0 | 1.0 | 0.0 |
| OMCAAFAD_57 | 1.0 | 0.0 | 1.0 |
| OMCAAFAD_66 | 0.0 | 1.0 | 0.0 |
| OMCAAFAD_77 | 0.0 | 1.0 | 0.0 |
| OMCAAFAD_88 | 0.0 | 1.0 | 0.0 |
| OMCAAFAD_90 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| No hit found | |||||
Phigaro v2.4.0 (Database: Jan. 2024 release)