Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 2 | 0 | 1 | 2.24 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| OGLLHIOI_45 | 2225 | 2959 | ErmG | ARO:3000522 | ErmG | 99.59 | 100.00 | L42817.1 |
| OGLLHIOI_45 | 877 | 1737 | TEM-116 | ARO:3000979 | TEM-116 | 100.00 | 100.00 | U36911.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| OGLLHIOI_45 | 877 | 1737 | blaTEM-116 | Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin | 100.00 | 100.00 | AY425988 |
| OGLLHIOI_45 | 2225 | 2959 | erm(G) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.73 | 100.00 | L42817 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| OGLLHIOI_45 | 880 | 1737 | blaTEM-116 | broad-spectrum class A beta-lactamase TEM-116 | ALLELEX | 100.00 | 100.00 | WP_000027050.1 |
| OGLLHIOI_45 | 2225 | 2956 | erm(G) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(G) | BLASTX | 99.59 | 100.00 | WP_063844787.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| OGLLHIOI_41 | 5798 | 1695 | cas9 | 0.0 | CRISPR-associated endonuclease | 100.00 | 100.00 | AAK33936 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| OGLLHIOI_1 | 0.0 | 1.0 | 0.0 |
| OGLLHIOI_2 | 0.0 | 1.0 | 0.0 |
| OGLLHIOI_3 | 0.0 | 1.0 | 0.0 |
| OGLLHIOI_4 | 0.0 | 1.0 | 0.0 |
| OGLLHIOI_5 | 0.0 | 1.0 | 0.0 |
| OGLLHIOI_6 | 0.0 | 1.0 | 0.0 |
| OGLLHIOI_7 | 0.0 | 1.0 | 0.0 |
| OGLLHIOI_8 | 0.0 | 1.0 | 0.0 |
| OGLLHIOI_9 | 0.0 | 1.0 | 0.0 |
| OGLLHIOI_10 | 0.0 | 1.0 | 0.0 |
| OGLLHIOI_11 | 0.0 | 1.0 | 0.0 |
| OGLLHIOI_12 | 0.0 | 1.0 | 0.0 |
| OGLLHIOI_13 | 0.0 | 1.0 | 0.0 |
| OGLLHIOI_14 | 0.0 | 1.0 | 0.0 |
| OGLLHIOI_15 | 0.0 | 1.0 | 0.0 |
| OGLLHIOI_16 | 0.0 | 1.0 | 0.0 |
| OGLLHIOI_17 | 0.0 | 1.0 | 0.0 |
| OGLLHIOI_18 | 0.0 | 1.0 | 0.0 |
| OGLLHIOI_19 | 0.0 | 1.0 | 0.0 |
| OGLLHIOI_20 | 0.0 | 1.0 | 0.0 |
| OGLLHIOI_21 | 0.0 | 1.0 | 0.0 |
| OGLLHIOI_22 | 0.0 | 1.0 | 0.0 |
| OGLLHIOI_23 | 0.0 | 1.0 | 0.0 |
| OGLLHIOI_24 | 0.0 | 1.0 | 0.0 |
| OGLLHIOI_25 | 0.0 | 1.0 | 0.0 |
| OGLLHIOI_26 | 0.0 | 1.0 | 0.0 |
| OGLLHIOI_27 | 0.0 | 1.0 | 0.0 |
| OGLLHIOI_28 | 0.0 | 1.0 | 0.0 |
| OGLLHIOI_29 | 0.0 | 1.0 | 0.0 |
| OGLLHIOI_30 | 0.0 | 1.0 | 0.0 |
| OGLLHIOI_31 | 0.0 | 1.0 | 0.0 |
| OGLLHIOI_32 | 0.0 | 1.0 | 0.0 |
| OGLLHIOI_33 | 0.0 | 1.0 | 0.0 |
| OGLLHIOI_34 | 0.0 | 1.0 | 0.0 |
| OGLLHIOI_35 | 1.0 | 0.0 | 1.0 |
| OGLLHIOI_36 | 0.0 | 1.0 | 0.0 |
| OGLLHIOI_37 | 0.0 | 1.0 | 0.0 |
| OGLLHIOI_38 | 0.0 | 1.0 | 0.0 |
| OGLLHIOI_39 | 0.0 | 1.0 | 0.0 |
| OGLLHIOI_40 | 0.0 | 1.0 | 0.0 |
| OGLLHIOI_41 | 0.0 | 1.0 | 0.0 |
| OGLLHIOI_42 | 1.0 | 0.0 | 1.0 |
| OGLLHIOI_43 | 0.0 | 1.0 | 0.0 |
| OGLLHIOI_44 | 0.0 | 1.0 | 0.0 |
| OGLLHIOI_45 | 1.0 | 0.0 | 1.0 |
| OGLLHIOI_46 | 0.0 | 1.0 | 0.0 |
| OGLLHIOI_47 | 1.0 | 0.0 | 1.0 |
| OGLLHIOI_49 | 1.0 | 0.0 | 1.0 |
| OGLLHIOI_50 | 0.0 | 1.0 | 0.0 |
| OGLLHIOI_51 | 1.0 | 0.0 | 1.0 |
| OGLLHIOI_52 | 1.0 | 0.0 | 1.0 |
| OGLLHIOI_53 | 1.0 | 0.0 | 1.0 |
| OGLLHIOI_54 | 1.0 | 0.0 | 1.0 |
| OGLLHIOI_55 | 0.0 | 1.0 | 0.0 |
| OGLLHIOI_57 | 0.0 | 1.0 | 0.0 |
| OGLLHIOI_58 | 1.0 | 0.0 | 1.0 |
| OGLLHIOI_66 | 0.0 | 1.0 | 0.0 |
| OGLLHIOI_77 | 0.0 | 1.0 | 0.0 |
| OGLLHIOI_87 | 0.0 | 1.0 | 0.0 |
| OGLLHIOI_89 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| OGLLHIOI_6 | 50433 | 53069 | False | Unknown | VOG9190, |
Phigaro v2.4.0 (Database: Jan. 2024 release)