Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 2 | 1 | 0 | 2.24 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| LEJECPAE_11 | 1411075 | 1413000 | tet(Q) | ARO:3000191 | tet(Q) | 96.41 | 97.56 | Z21523.1 |
| LEJECPAE_13 | 343683 | 344585 | CepA-29 | ARO:3006224 | CepA-29 | 99.67 | 100.00 | NG_050385.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| LEJECPAE_11 | 1411075 | 1413000 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 99.84 | 100.00 | L33696 |
| LEJECPAE_13 | 343683 | 344585 | cepA-29 | Unknown Beta-lactam | 99.78 | 100.00 | U05884 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| LEJECPAE_13 | 343686 | 344585 | cepA | CepA family extended-spectrum class A beta-lactamase | BLASTX | 99.67 | 100.00 | WP_063865204.1 |
| LEJECPAE_11 | 1411075 | 1412997 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 99.53 | 100.00 | WP_063856407.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| LEJECPAE_11 | 68172 | 69365 | bft-1 | 0.0 | BFT B. fragilis toxin, subtype 1 | Exotoxin | 100.00 | 100.00 | BAA77276 |
| LEJECPAE_11 | 68172 | 69365 | bft-2 | 0.0 | BFT B. fragilis toxin, subtype 2 | Exotoxin | 94.89 | 100.00 | BAA77277 |
| LEJECPAE_11 | 68172 | 69365 | bft-3 | 0.0 | BFT B. fragilis toxin, subtype 3 | Exotoxin | 94.47 | 100.00 | BAA77275 |
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| LEJECPAE_1 | 0.0 | 1.0 | 0.0 |
| LEJECPAE_2 | 0.0 | 1.0 | 0.0 |
| LEJECPAE_3 | 0.0 | 1.0 | 0.0 |
| LEJECPAE_4 | 0.0 | 1.0 | 0.0 |
| LEJECPAE_5 | 0.0 | 1.0 | 0.0 |
| LEJECPAE_6 | 0.0 | 1.0 | 0.0 |
| LEJECPAE_7 | 0.0 | 1.0 | 0.0 |
| LEJECPAE_8 | 0.0 | 1.0 | 0.0 |
| LEJECPAE_9 | 0.0 | 1.0 | 0.0 |
| LEJECPAE_10 | 0.0 | 1.0 | 0.0 |
| LEJECPAE_11 | 0.0 | 1.0 | 0.0 |
| LEJECPAE_12 | 0.0 | 1.0 | 0.0 |
| LEJECPAE_13 | 0.0 | 1.0 | 0.0 |
| LEJECPAE_14 | 0.0 | 1.0 | 0.0 |
| LEJECPAE_15 | 0.0 | 1.0 | 0.0 |
| LEJECPAE_16 | 0.0 | 1.0 | 0.0 |
| LEJECPAE_17 | 0.0 | 1.0 | 0.0 |
| LEJECPAE_18 | 0.0 | 1.0 | 0.0 |
| LEJECPAE_19 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| LEJECPAE_14 | 381700 | 393550 | False | Siphoviridae | VOG11071, |
| LEJECPAE_17 | 181854 | 186970 | False | Myoviridae | / |
Phigaro v2.4.0 (Database: Jan. 2024 release)