Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 3 | 0 | 0 | 3.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| HHNGIGHF_16 | 70189 | 70989 | ErmF | ARO:3000498 | ErmF | 98.50 | 100.00 | M17124.1 |
| HHNGIGHF_16 | 67977 | 69902 | tet(Q) | ARO:3000191 | tet(Q) | 89.08 | 97.56 | Z21523.1 |
| HHNGIGHF_56 | 52731 | 54656 | tet(Q) | ARO:3000191 | tet(Q) | 96.72 | 97.56 | Z21523.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| HHNGIGHF_16 | 70189 | 70989 | erm(F) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.50 | 100.00 | M17808 |
| HHNGIGHF_56 | 52731 | 54656 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 97.66 | 100.00 | L33696 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| HHNGIGHF_16 | 70192 | 70989 | erm(F) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(F) | BLASTX | 98.87 | 100.00 | WP_002682030.1 |
| HHNGIGHF_56 | 52731 | 54653 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 97.97 | 100.00 | WP_063856407.1 |
| HHNGIGHF_16 | 67980 | 69902 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 89.55 | 100.00 | WP_063856407.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| HHNGIGHF_1 | 0.0 | 1.0 | 0.0 |
| HHNGIGHF_3 | 0.0 | 1.0 | 0.0 |
| HHNGIGHF_4 | 0.0 | 1.0 | 0.0 |
| HHNGIGHF_5 | 0.0 | 1.0 | 0.0 |
| HHNGIGHF_6 | 0.0 | 1.0 | 0.0 |
| HHNGIGHF_7 | 0.0 | 1.0 | 0.0 |
| HHNGIGHF_8 | 0.0 | 1.0 | 0.0 |
| HHNGIGHF_9 | 0.0 | 1.0 | 0.0 |
| HHNGIGHF_10 | 0.0 | 1.0 | 0.0 |
| HHNGIGHF_11 | 0.0 | 1.0 | 0.0 |
| HHNGIGHF_12 | 0.0 | 1.0 | 0.0 |
| HHNGIGHF_13 | 0.0 | 1.0 | 0.0 |
| HHNGIGHF_14 | 0.0 | 1.0 | 0.0 |
| HHNGIGHF_15 | 0.0 | 1.0 | 0.0 |
| HHNGIGHF_16 | 0.0 | 1.0 | 0.0 |
| HHNGIGHF_17 | 0.0 | 1.0 | 0.0 |
| HHNGIGHF_18 | 0.0 | 1.0 | 0.0 |
| HHNGIGHF_19 | 0.0 | 1.0 | 0.0 |
| HHNGIGHF_20 | 0.0 | 1.0 | 0.0 |
| HHNGIGHF_21 | 1.0 | 0.0 | 1.0 |
| HHNGIGHF_22 | 0.0 | 1.0 | 0.0 |
| HHNGIGHF_23 | 0.0 | 1.0 | 0.0 |
| HHNGIGHF_24 | 0.0 | 1.0 | 0.0 |
| HHNGIGHF_25 | 1.0 | 0.0 | 1.0 |
| HHNGIGHF_26 | 0.0 | 1.0 | 0.0 |
| HHNGIGHF_27 | 0.0 | 1.0 | 0.0 |
| HHNGIGHF_28 | 0.0 | 1.0 | 0.0 |
| HHNGIGHF_29 | 0.0 | 1.0 | 0.0 |
| HHNGIGHF_30 | 0.0 | 1.0 | 0.0 |
| HHNGIGHF_31 | 1.0 | 0.0 | 1.0 |
| HHNGIGHF_33 | 1.0 | 0.0 | 1.0 |
| HHNGIGHF_34 | 1.0 | 0.0 | 1.0 |
| HHNGIGHF_35 | 0.0 | 1.0 | 0.0 |
| HHNGIGHF_36 | 1.0 | 0.0 | 1.0 |
| HHNGIGHF_37 | 1.0 | 0.0 | 1.0 |
| HHNGIGHF_38 | 0.0 | 1.0 | 0.0 |
| HHNGIGHF_39 | 1.0 | 0.0 | 1.0 |
| HHNGIGHF_40 | 1.0 | 0.0 | 1.0 |
| HHNGIGHF_41 | 1.0 | 0.0 | 1.0 |
| HHNGIGHF_46 | 0.0 | 1.0 | 0.0 |
| HHNGIGHF_52 | 0.0 | 1.0 | 0.0 |
| HHNGIGHF_56 | 0.0 | 1.0 | 0.0 |
| HHNGIGHF_58 | 0.0 | 1.0 | 0.0 |
| HHNGIGHF_59 | 0.0 | 1.0 | 0.0 |
| HHNGIGHF_61 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| No hit found | |||||
Phigaro v2.4.0 (Database: Jan. 2024 release)