Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 6 | 0 | 0 | 6.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| PFGOIOME_11 | 126160 | 127125 | CfxA4 | ARO:3003005 | CfxA4 | 100.00 | 100.00 | AY769933.1 |
| PFGOIOME_55 | 125409 | 127334 | tet(Q) | ARO:3000191 | tet(Q) | 96.41 | 97.56 | Z21523.1 |
| PFGOIOME_3 | 105259 | 107184 | tet(Q) | ARO:3000191 | tet(Q) | 90.48 | 97.56 | Z21523.1 |
| PFGOIOME_3 | 103377 | 104513 | tet(X) | ARO:3000205 | tet(X) | 99.74 | 97.42 | M37699.1 |
| PFGOIOME_3 | 102364 | 103164 | ErmF | ARO:3000498 | ErmF | 99.62 | 100.00 | M17124.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| PFGOIOME_3 | 48535 | 49401 | ant(6)-Ia | Streptomycin | 100.00 | 100.00 | KF864551 |
| PFGOIOME_11 | 126160 | 127125 | cfxA4 | Unknown Beta-lactam | 100.00 | 100.00 | AY769933 |
| PFGOIOME_3 | 102364 | 103164 | erm(F) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 100.00 | 100.00 | M17808 |
| PFGOIOME_3 | 103377 | 104543 | tet(X) | Doxycycline, Tetracycline, Minocycline, Tigecycline | 99.91 | 100.00 | M37699 |
| PFGOIOME_55 | 125409 | 127334 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 99.84 | 100.00 | L33696 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| PFGOIOME_3 | 48538 | 49401 | aadE | aminoglycoside 6-adenylyltransferase AadE | EXACTX | 100.00 | 100.00 | WP_001255868.1 |
| PFGOIOME_11 | 126160 | 127122 | cfxA4 | extended-spectrum class A beta-lactamase CfxA4 | EXACTX | 100.00 | 100.00 | WP_057280848.1 |
| PFGOIOME_3 | 102364 | 103161 | erm(F) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(F) | EXACTX | 100.00 | 100.00 | WP_002682030.1 |
| PFGOIOME_3 | 103380 | 104543 | tet(X2) | tetracycline-inactivating monooxygenase Tet(X2) | BLASTX | 99.74 | 100.00 | WP_008651082.1 |
| PFGOIOME_55 | 125409 | 127331 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 99.53 | 100.00 | WP_063856407.1 |
| PFGOIOME_3 | 105262 | 107184 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 91.42 | 100.00 | WP_063856407.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| PFGOIOME_1 | 0.0 | 1.0 | 0.0 |
| PFGOIOME_2 | 0.0 | 1.0 | 0.0 |
| PFGOIOME_3 | 0.0 | 1.0 | 0.0 |
| PFGOIOME_4 | 0.0 | 1.0 | 0.0 |
| PFGOIOME_5 | 0.0 | 1.0 | 0.0 |
| PFGOIOME_6 | 0.0 | 1.0 | 0.0 |
| PFGOIOME_7 | 0.0 | 1.0 | 0.0 |
| PFGOIOME_8 | 0.0 | 1.0 | 0.0 |
| PFGOIOME_9 | 0.0 | 1.0 | 0.0 |
| PFGOIOME_10 | 0.0 | 1.0 | 0.0 |
| PFGOIOME_11 | 0.0 | 1.0 | 0.0 |
| PFGOIOME_13 | 0.0 | 1.0 | 0.0 |
| PFGOIOME_14 | 0.0 | 1.0 | 0.0 |
| PFGOIOME_15 | 0.0 | 1.0 | 0.0 |
| PFGOIOME_16 | 0.0 | 1.0 | 0.0 |
| PFGOIOME_17 | 0.0 | 1.0 | 0.0 |
| PFGOIOME_18 | 0.0 | 1.0 | 0.0 |
| PFGOIOME_19 | 0.0 | 1.0 | 0.0 |
| PFGOIOME_20 | 0.0 | 1.0 | 0.0 |
| PFGOIOME_21 | 0.0 | 1.0 | 0.0 |
| PFGOIOME_22 | 0.0 | 1.0 | 0.0 |
| PFGOIOME_23 | 0.0 | 1.0 | 0.0 |
| PFGOIOME_24 | 0.0 | 1.0 | 0.0 |
| PFGOIOME_25 | 0.0 | 1.0 | 0.0 |
| PFGOIOME_26 | 0.0 | 1.0 | 0.0 |
| PFGOIOME_27 | 0.0 | 1.0 | 0.0 |
| PFGOIOME_28 | 0.0 | 1.0 | 0.0 |
| PFGOIOME_29 | 0.0 | 1.0 | 0.0 |
| PFGOIOME_30 | 0.0 | 1.0 | 0.0 |
| PFGOIOME_31 | 0.0 | 1.0 | 0.0 |
| PFGOIOME_32 | 0.0 | 1.0 | 0.0 |
| PFGOIOME_33 | 1.0 | 0.0 | 1.0 |
| PFGOIOME_34 | 0.0 | 1.0 | 0.0 |
| PFGOIOME_35 | 1.0 | 0.0 | 1.0 |
| PFGOIOME_36 | 1.0 | 0.0 | 1.0 |
| PFGOIOME_38 | 0.0 | 1.0 | 0.0 |
| PFGOIOME_39 | 1.0 | 0.0 | 1.0 |
| PFGOIOME_40 | 1.0 | 0.0 | 1.0 |
| PFGOIOME_41 | 0.0 | 1.0 | 0.0 |
| PFGOIOME_45 | 0.0 | 1.0 | 0.0 |
| PFGOIOME_50 | 0.0 | 1.0 | 0.0 |
| PFGOIOME_53 | 0.0 | 1.0 | 0.0 |
| PFGOIOME_54 | 0.0 | 1.0 | 0.0 |
| PFGOIOME_55 | 0.0 | 1.0 | 0.0 |
| PFGOIOME_56 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| PFGOIOME_9 | 47557 | 52025 | False | Unknown | VOG4556, |
| PFGOIOME_45 | 182011 | 188664 | False | Siphoviridae | VOG0204, |
Phigaro v2.4.0 (Database: Jan. 2024 release)