Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| CHMDFCCI_39 | 27529 | 28233 | WalR | 1.05e-114 | transcriptional regulatory protein | 84.25 | 100.00 | EPH95667 |
| CHMDFCCI_16 | 98566 | 98378 | CspR | 2.53e-29 | cold shock protein | 85.71 | 95.45 | AAO82613 |
| CHMDFCCI_16 | 98566 | 98378 | CspA | 1.67e-28 | cold shock protein | 85.71 | 95.45 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| CHMDFCCI_17 | 901 | 1836 | rep28 | 936 / 936 | 100.00 | CP005948 |
| CHMDFCCI_51 | 31066 | 31694 | rep38 | 630 / 903 | 88.41 | CP005943 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| CHMDFCCI_1 | 1.0 | 0.0 | 1.0 |
| CHMDFCCI_2 | 0.0 | 1.0 | 0.0 |
| CHMDFCCI_3 | 0.0 | 1.0 | 0.0 |
| CHMDFCCI_4 | 0.0 | 1.0 | 0.0 |
| CHMDFCCI_5 | 1.0 | 0.0 | 1.0 |
| CHMDFCCI_7 | 0.0 | 1.0 | 0.0 |
| CHMDFCCI_8 | 1.0 | 0.0 | 1.0 |
| CHMDFCCI_9 | 0.0 | 1.0 | 0.0 |
| CHMDFCCI_10 | 0.0 | 1.0 | 0.0 |
| CHMDFCCI_11 | 1.0 | 0.0 | 1.0 |
| CHMDFCCI_12 | 0.0 | 1.0 | 0.0 |
| CHMDFCCI_13 | 1.0 | 0.0 | 1.0 |
| CHMDFCCI_14 | 0.0 | 1.0 | 0.0 |
| CHMDFCCI_15 | 1.0 | 0.0 | 1.0 |
| CHMDFCCI_16 | 0.0 | 1.0 | 0.0 |
| CHMDFCCI_17 | 1.0 | 0.0 | 1.0 |
| CHMDFCCI_18 | 0.0 | 1.0 | 0.0 |
| CHMDFCCI_19 | 1.0 | 0.0 | 1.0 |
| CHMDFCCI_20 | 0.0 | 1.0 | 0.0 |
| CHMDFCCI_21 | 0.0 | 1.0 | 0.0 |
| CHMDFCCI_22 | 0.0 | 1.0 | 0.0 |
| CHMDFCCI_23 | 1.0 | 0.0 | 1.0 |
| CHMDFCCI_24 | 1.0 | 0.0 | 1.0 |
| CHMDFCCI_25 | 0.0 | 1.0 | 0.0 |
| CHMDFCCI_26 | 1.0 | 0.0 | 1.0 |
| CHMDFCCI_27 | 0.0 | 1.0 | 0.0 |
| CHMDFCCI_28 | 0.0 | 1.0 | 0.0 |
| CHMDFCCI_29 | 0.0 | 1.0 | 0.0 |
| CHMDFCCI_30 | 1.0 | 0.0 | 1.0 |
| CHMDFCCI_31 | 0.0 | 1.0 | 0.0 |
| CHMDFCCI_32 | 0.0 | 1.0 | 0.0 |
| CHMDFCCI_33 | 1.0 | 0.0 | 1.0 |
| CHMDFCCI_34 | 0.0 | 1.0 | 0.0 |
| CHMDFCCI_35 | 0.0 | 1.0 | 0.0 |
| CHMDFCCI_36 | 1.0 | 0.0 | 1.0 |
| CHMDFCCI_37 | 0.0 | 1.0 | 0.0 |
| CHMDFCCI_38 | 0.0 | 1.0 | 0.0 |
| CHMDFCCI_39 | 0.0 | 1.0 | 0.0 |
| CHMDFCCI_40 | 0.0 | 1.0 | 0.0 |
| CHMDFCCI_41 | 0.0 | 1.0 | 0.0 |
| CHMDFCCI_42 | 0.0 | 1.0 | 0.0 |
| CHMDFCCI_43 | 0.0 | 1.0 | 0.0 |
| CHMDFCCI_44 | 1.0 | 0.0 | 1.0 |
| CHMDFCCI_45 | 0.0 | 1.0 | 0.0 |
| CHMDFCCI_46 | 0.0 | 1.0 | 0.0 |
| CHMDFCCI_47 | 0.0 | 1.0 | 0.0 |
| CHMDFCCI_48 | 0.0 | 1.0 | 0.0 |
| CHMDFCCI_49 | 0.0 | 1.0 | 0.0 |
| CHMDFCCI_50 | 0.0 | 1.0 | 0.0 |
| CHMDFCCI_51 | 1.0 | 0.0 | 1.0 |
| CHMDFCCI_52 | 0.0 | 1.0 | 0.0 |
| CHMDFCCI_53 | 0.0 | 1.0 | 0.0 |
| CHMDFCCI_54 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| CHMDFCCI_37 | 54974 | 87134 | False | Siphoviridae | VOG0514, VOG4566, VOG0189, VOG4693, VOG0350, VOG3643, VOG0198, VOG8193, VOG4841, VOG4581, VOG1886, VOG1886, VOG0202, VOG4556, VOG4573, VOG4553, VOG0204, VOG0205, VOG0207, VOG4586, VOG0209, VOG0660, VOG6163, VOG4605, VOG4599, VOG10957, VOG8870, VOG9998, VOG4615, VOG0753 |
| CHMDFCCI_40 | 76204 | 97612 | False | Siphoviridae | VOG9888, VOG8917, VOG9997, VOG3498, VOG4619, VOG0801, VOG5068, VOG6163, VOG0541, VOG4586, VOG0704, VOG0539, VOG4589, VOG0562, VOG4553, VOG4573, VOG4556, VOG4844 |
| CHMDFCCI_40 | 104197 | 108738 | False | Siphoviridae | VOG4632, VOG6545, VOG0322, VOG4548, VOG0321 |
Phigaro v2.4.0 (Database: Jan. 2024 release)