Probiotic potential risk score


ARGs VFs PGs PPRS
1110917.38

PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).

Antibiotic resistance genes


Comprehensive Antibiotic Resistance Database (CARD)

Query ID Begin End ARO name ARO accession CARD name Identity Coverage Accession no.
LOHCBLIL_2382900530438lmrBARO:3002813lmrB98.95100.00JYFL01000006.1
LOHCBLIL_32041321582bmrARO:3003007bmr99.49100.00M33768.1
LOHCBLIL_222937111941Bacillus subtilis mprFARO:3003324Bsub_mprF99.77100.00AL009126.3
LOHCBLIL_6840824420ykkCARO:3003063ykkC99.11100.00AL009126.1
LOHCBLIL_6837654082ykkDARO:3003064ykkD98.10100.00AL009126.1
LOHCBLIL_17822303432bltARO:3003006blt100.00100.00L32599.1
LOHCBLIL_24821442998aadKARO:3002627aadK97.54100.00AL009126.1

RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)

ResFinder

Query ID Begin End Resistance gene Phenotype Identity Coverage Accession no.
LOHCBLIL_2112476626142tet(L)Doxycycline, Tetracycline, Minocycline, Tigecycline, Doxycycline, Tetracycline98.77100.00D12567
LOHCBLIL_24821462998aadKStreptomycin98.4899.77M26879
LOHCBLIL_19664837402mph(K)Spiramycin, Telithromycin97.6199.89NC_000964

ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)

AMRFinderPlus

Query ID Begin End Gene symbol Sequence name Method Identity Coverage Accession no.
LOHCBLIL_2112476926142tet(L)tetracycline efflux MFS transporter Tet(L)BLASTX98.69100.00WP_063856081.1
LOHCBLIL_132829729937vmlRABC-F type ribosomal protection protein VmlRINTERNAL_STOP97.81100.00WP_003234144.1
LOHCBLIL_24821472998aadKaminoglycoside 6-adenylyltransferase AadKBLASTX97.54100.00WP_003229862.1
LOHCBLIL_2112227322791satAstreptothricin N-acetyltransferase SatABLASTX90.17100.00WP_003242546.1

AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)

Virulence factors


Virulence Factor Database (VFDB)

Query ID qstart qend Gene name e-value VF name VF category Identity Coverage Accession no.
LOHCBLIL_293153832476dhbB0.0BacillibactinNutritional/Metabolic factor99.68100.00NP_391077
LOHCBLIL_8633074488capB0.0CapsuleImmune modulation99.66100.00NP_391471
LOHCBLIL_8616822824capA0.0CapsuleImmune modulation99.56100.00NP_391469
LOHCBLIL_8628433292capC0.0CapsuleImmune modulation99.56100.00NP_391470
LOHCBLIL_154956410205hlyIII0.0Hemolysin IIIExotoxin99.53100.00NP_390062
LOHCBLIL_293536336148dhbA0.0BacillibactinNutritional/Metabolic factor99.36100.00NP_391080
LOHCBLIL_1463413035893dep/capD0.0CapsuleImmune modulation99.21100.00NP_389723
LOHCBLIL_292438231518dhbF0.0BacillibactinNutritional/Metabolic factor98.78100.00NP_391076
LOHCBLIL_293414135337dhbC0.0BacillibactinNutritional/Metabolic factor98.58100.00NP_391079
LOHCBLIL_293250434123dhbE0.0BacillibactinNutritional/Metabolic factor97.78100.00NP_391078

BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)

VirulenceFinder

Query ID Begin End Database Virulence factor Protein function Identity Coverage Accession no.
No hit found

VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)

Pathogenic genes


PHI-base

Query ID qstart qend Gene name e-value Function Identity Coverage Gene ID
LOHCBLIL_1742797226836tufA0.0elongation factor Tu85.7595.69AHM69299
LOHCBLIL_2291117110302pdxS1.93e-151encodes the putative pyridoxal 5'-phosphate synthase subunit PdxS83.4598.31ACE61268
LOHCBLIL_20437813CodY3.95e-126nutrient-responsive regulator81.08100.00ACJ80679
LOHCBLIL_175443955008ClpP4.22e-100part of proteolytic complex81.0597.44BAB94595
LOHCBLIL_1080198411spxA12.77e-71redox-responsive transcription factor83.97100.00AAF21893
LOHCBLIL_1080198411spx1.65e-69essential gene which is a thiol/oxidative stress sensor80.15100.00BAB57159
LOHCBLIL_1861445114209SpoVG3.35e-39RNA-binding protein81.4879.41AAT02994
LOHCBLIL_7931383335CspA2.42e-32cold shock protein89.39100.00CAA62903
LOHCBLIL_1542143621630CspD1.95e-29cold shock protein81.5498.48CAC99957
LOHCBLIL_2122127521469CspB2.67e-28cold shock protein83.0898.48CAD00094
LOHCBLIL_7931383332CspR7.59e-28cold shock protein80.0098.48AAO82613

BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)

Plasmid


PlasmidFinder

Query ID Begin End Plasmid Query / Template Identity Accession no.
LOHCBLIL_13552905450Col(SD853)161 / 19483.23NC015392

PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)

PlasmidHunter

Query ID Prediction Chromosome Plasmid
LOHCBLIL_21.00.01.0
LOHCBLIL_30.01.00.0
LOHCBLIL_40.01.00.0
LOHCBLIL_61.00.01.0
LOHCBLIL_70.01.00.0
LOHCBLIL_80.01.00.0
LOHCBLIL_90.01.00.0
LOHCBLIL_100.01.00.0
LOHCBLIL_110.01.00.0
LOHCBLIL_120.01.00.0
LOHCBLIL_130.01.00.0
LOHCBLIL_140.01.00.0
LOHCBLIL_150.01.00.0
LOHCBLIL_161.00.01.0
LOHCBLIL_170.01.00.0
LOHCBLIL_180.01.00.0
LOHCBLIL_191.00.01.0
LOHCBLIL_201.00.01.0
LOHCBLIL_210.01.00.0
LOHCBLIL_220.01.00.0
LOHCBLIL_230.01.00.0
LOHCBLIL_240.01.00.0
LOHCBLIL_250.01.00.0
LOHCBLIL_260.01.00.0
LOHCBLIL_271.00.01.0
LOHCBLIL_290.01.00.0
LOHCBLIL_300.01.00.0
LOHCBLIL_311.00.01.0
LOHCBLIL_321.00.01.0
LOHCBLIL_331.00.01.0
LOHCBLIL_340.01.00.0
LOHCBLIL_351.00.01.0
LOHCBLIL_360.01.00.0
LOHCBLIL_370.01.00.0
LOHCBLIL_380.01.00.0
LOHCBLIL_390.01.00.0
LOHCBLIL_410.01.00.0
LOHCBLIL_420.01.00.0
LOHCBLIL_430.01.00.0
LOHCBLIL_440.01.00.0
LOHCBLIL_450.01.00.0
LOHCBLIL_460.01.00.0
LOHCBLIL_480.01.00.0
LOHCBLIL_520.01.00.0
LOHCBLIL_530.01.00.0
LOHCBLIL_540.01.00.0
LOHCBLIL_550.01.00.0
LOHCBLIL_561.00.01.0
LOHCBLIL_571.00.01.0
LOHCBLIL_590.01.00.0
LOHCBLIL_600.01.00.0
LOHCBLIL_620.01.00.0
LOHCBLIL_630.01.00.0
LOHCBLIL_650.01.00.0
LOHCBLIL_661.00.01.0
LOHCBLIL_670.01.00.0
LOHCBLIL_680.01.00.0
LOHCBLIL_690.01.00.0
LOHCBLIL_700.01.00.0
LOHCBLIL_720.01.00.0
LOHCBLIL_740.01.00.0
LOHCBLIL_750.01.00.0
LOHCBLIL_761.00.01.0
LOHCBLIL_770.01.00.0
LOHCBLIL_781.00.01.0
LOHCBLIL_790.01.00.0
LOHCBLIL_800.01.00.0
LOHCBLIL_810.01.00.0
LOHCBLIL_821.00.01.0
LOHCBLIL_831.00.01.0
LOHCBLIL_840.01.00.0
LOHCBLIL_851.00.01.0
LOHCBLIL_860.01.00.0
LOHCBLIL_870.01.00.0
LOHCBLIL_900.01.00.0
LOHCBLIL_911.00.01.0
LOHCBLIL_921.00.01.0
LOHCBLIL_930.01.00.0
LOHCBLIL_940.01.00.0
LOHCBLIL_950.01.00.0
LOHCBLIL_971.00.01.0
LOHCBLIL_980.01.00.0
LOHCBLIL_990.01.00.0
LOHCBLIL_1010.01.00.0
LOHCBLIL_1020.01.00.0
LOHCBLIL_1030.01.00.0
LOHCBLIL_1041.00.01.0
LOHCBLIL_1050.01.00.0
LOHCBLIL_1060.01.00.0
LOHCBLIL_1070.01.00.0
LOHCBLIL_1080.01.00.0
LOHCBLIL_1091.00.01.0
LOHCBLIL_1100.01.00.0
LOHCBLIL_1110.01.00.0
LOHCBLIL_1130.01.00.0
LOHCBLIL_1150.01.00.0
LOHCBLIL_1160.01.00.0
LOHCBLIL_1171.00.01.0
LOHCBLIL_1200.01.00.0
LOHCBLIL_1210.01.00.0
LOHCBLIL_1220.01.00.0
LOHCBLIL_1230.01.00.0
LOHCBLIL_1240.01.00.0
LOHCBLIL_1250.01.00.0
LOHCBLIL_1260.01.00.0
LOHCBLIL_1270.01.00.0
LOHCBLIL_1280.01.00.0
LOHCBLIL_1291.00.01.0
LOHCBLIL_1310.01.00.0
LOHCBLIL_1330.01.00.0
LOHCBLIL_1351.00.01.0
LOHCBLIL_1360.01.00.0
LOHCBLIL_1380.01.00.0
LOHCBLIL_1410.01.00.0
LOHCBLIL_1431.00.01.0
LOHCBLIL_1440.01.00.0
LOHCBLIL_1450.01.00.0
LOHCBLIL_1460.01.00.0
LOHCBLIL_1470.01.00.0
LOHCBLIL_1501.00.01.0
LOHCBLIL_1520.01.00.0
LOHCBLIL_1540.01.00.0
LOHCBLIL_1550.01.00.0
LOHCBLIL_1570.01.00.0
LOHCBLIL_1630.01.00.0
LOHCBLIL_1640.01.00.0
LOHCBLIL_1650.01.00.0
LOHCBLIL_1680.01.00.0
LOHCBLIL_1690.01.00.0
LOHCBLIL_1730.01.00.0
LOHCBLIL_1740.01.00.0
LOHCBLIL_1750.01.00.0
LOHCBLIL_1760.01.00.0
LOHCBLIL_1770.01.00.0
LOHCBLIL_1780.01.00.0
LOHCBLIL_1790.01.00.0
LOHCBLIL_1800.01.00.0
LOHCBLIL_1810.01.00.0
LOHCBLIL_1821.00.01.0
LOHCBLIL_1830.01.00.0
LOHCBLIL_1840.01.00.0
LOHCBLIL_1860.01.00.0
LOHCBLIL_1870.01.00.0
LOHCBLIL_1880.01.00.0
LOHCBLIL_1891.00.01.0
LOHCBLIL_1911.00.01.0
LOHCBLIL_1920.01.00.0
LOHCBLIL_1950.01.00.0
LOHCBLIL_1960.01.00.0
LOHCBLIL_1980.01.00.0
LOHCBLIL_1990.01.00.0
LOHCBLIL_2000.01.00.0
LOHCBLIL_2021.00.01.0
LOHCBLIL_2030.01.00.0
LOHCBLIL_2040.01.00.0
LOHCBLIL_2050.01.00.0
LOHCBLIL_2061.00.01.0
LOHCBLIL_2070.01.00.0
LOHCBLIL_2080.01.00.0
LOHCBLIL_2090.01.00.0
LOHCBLIL_2100.01.00.0
LOHCBLIL_2110.01.00.0
LOHCBLIL_2120.01.00.0
LOHCBLIL_2130.01.00.0
LOHCBLIL_2140.01.00.0
LOHCBLIL_2150.01.00.0
LOHCBLIL_2161.00.01.0
LOHCBLIL_2180.01.00.0
LOHCBLIL_2190.01.00.0
LOHCBLIL_2200.01.00.0
LOHCBLIL_2211.00.01.0
LOHCBLIL_2220.01.00.0
LOHCBLIL_2230.01.00.0
LOHCBLIL_2240.01.00.0
LOHCBLIL_2251.00.01.0
LOHCBLIL_2260.01.00.0
LOHCBLIL_2290.01.00.0
LOHCBLIL_2300.01.00.0
LOHCBLIL_2310.01.00.0
LOHCBLIL_2320.01.00.0
LOHCBLIL_2330.01.00.0
LOHCBLIL_2341.00.01.0
LOHCBLIL_2350.01.00.0
LOHCBLIL_2360.01.00.0
LOHCBLIL_2370.01.00.0
LOHCBLIL_2380.01.00.0
LOHCBLIL_2390.01.00.0
LOHCBLIL_2400.01.00.0
LOHCBLIL_2410.01.00.0
LOHCBLIL_2420.01.00.0
LOHCBLIL_2430.01.00.0
LOHCBLIL_2440.01.00.0
LOHCBLIL_2450.01.00.0
LOHCBLIL_2461.00.01.0
LOHCBLIL_2470.01.00.0
LOHCBLIL_2480.01.00.0
LOHCBLIL_2490.01.00.0
LOHCBLIL_2500.01.00.0
LOHCBLIL_2510.01.00.0
LOHCBLIL_2520.01.00.0
LOHCBLIL_2530.01.00.0
LOHCBLIL_2540.01.00.0

PlasmidHunter v 1.4.5 (Database: May. 2024 release)

Prophage


Phigaro

Query ID Begin End Transposable Taxonomy pVOGs
LOHCBLIL_69187925519FalseSiphoviridaeVOG0047, VOG4574, VOG0641, VOG3390, VOG4612, VOG4660, VOG4619, VOG0801, VOG6163, VOG0541, VOG4586, VOG0704, VOG0539, VOG4589, VOG0204, VOG4553, VOG4568, VOG4556, VOG4544, VOG4581, VOG4841, VOG0531
LOHCBLIL_16370721991FalseSiphoviridaeVOG0641, VOG4705, VOG3390, VOG4612, VOG4612, VOG4660, VOG4619, VOG0801, VOG6163, VOG5910, VOG0541, VOG4586, VOG0704, VOG0539, VOG4589, VOG0204, VOG5361, VOG4553, VOG4573, VOG4556, VOG2935, VOG1886, VOG4581
LOHCBLIL_181366125797FalseSiphoviridaeVOG10940, VOG5535, VOG4599, VOG4605, VOG9745, VOG0701, VOG10044, VOG6548, VOG0697, VOG0696, VOG0695, VOG2621, VOG4572, VOG9317, VOG0692, VOG0691, VOG10227, VOG0796, VOG7983, VOG0198, VOG3798, VOG0044, VOG0102, VOG0397
LOHCBLIL_1812793036290FalseSiphoviridaeVOG0189, VOG4566, VOG1309, VOG4600, VOG4552, VOG0650, VOG9667, VOG9667, VOG4662
LOHCBLIL_208267217631FalseMyoviridaeVOG7718, VOG4862, VOG4691, VOG10120, VOG3894, VOG4885, VOG4865, VOG6163, VOG3892, VOG3891, VOG3890, VOG10055, VOG4870
LOHCBLIL_215273525933FalseMyoviridaeVOG5447, VOG0796, VOG10227, VOG4773, VOG4685, VOG0749, VOG3890, VOG3891, VOG3892, VOG6163, VOG4865, VOG4885, VOG3894, VOG4550, VOG4691, VOG4862, VOG7718, VOG3390, VOG4705, VOG0753, VOG0136

Phigaro v2.4.0 (Database: Jan. 2024 release)


Insertion sequence (IS) elements