Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| NDJLHOFJ_6 | 22666 | 23370 | WalR | 1.94e-114 | transcriptional regulatory protein | 83.83 | 100.00 | EPH95667 |
| NDJLHOFJ_3 | 13524 | 13330 | CspR | 1.68e-29 | cold shock protein | 84.61 | 98.48 | AAO82613 |
| NDJLHOFJ_3 | 13524 | 13327 | CspA | 2.58e-29 | cold shock protein | 84.85 | 100.00 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| NDJLHOFJ_1 | 1 | 954 | repUS64 | 954 / 954 | 99.90 | JN601038 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| NDJLHOFJ_1 | 1.0 | 0.0 | 1.0 |
| NDJLHOFJ_2 | 0.0 | 1.0 | 0.0 |
| NDJLHOFJ_3 | 0.0 | 1.0 | 0.0 |
| NDJLHOFJ_4 | 0.0 | 1.0 | 0.0 |
| NDJLHOFJ_5 | 0.0 | 1.0 | 0.0 |
| NDJLHOFJ_6 | 0.0 | 1.0 | 0.0 |
| NDJLHOFJ_7 | 0.0 | 1.0 | 0.0 |
| NDJLHOFJ_8 | 0.0 | 1.0 | 0.0 |
| NDJLHOFJ_9 | 0.0 | 1.0 | 0.0 |
| NDJLHOFJ_10 | 0.0 | 1.0 | 0.0 |
| NDJLHOFJ_11 | 0.0 | 1.0 | 0.0 |
| NDJLHOFJ_12 | 0.0 | 1.0 | 0.0 |
| NDJLHOFJ_13 | 0.0 | 1.0 | 0.0 |
| NDJLHOFJ_14 | 0.0 | 1.0 | 0.0 |
| NDJLHOFJ_15 | 0.0 | 1.0 | 0.0 |
| NDJLHOFJ_16 | 0.0 | 1.0 | 0.0 |
| NDJLHOFJ_17 | 1.0 | 0.0 | 1.0 |
| NDJLHOFJ_18 | 0.0 | 1.0 | 0.0 |
| NDJLHOFJ_19 | 0.0 | 1.0 | 0.0 |
| NDJLHOFJ_20 | 0.0 | 1.0 | 0.0 |
| NDJLHOFJ_21 | 0.0 | 1.0 | 0.0 |
| NDJLHOFJ_22 | 0.0 | 1.0 | 0.0 |
| NDJLHOFJ_23 | 0.0 | 1.0 | 0.0 |
| NDJLHOFJ_24 | 1.0 | 0.0 | 1.0 |
| NDJLHOFJ_25 | 0.0 | 1.0 | 0.0 |
| NDJLHOFJ_26 | 1.0 | 0.0 | 1.0 |
| NDJLHOFJ_30 | 1.0 | 0.0 | 1.0 |
| NDJLHOFJ_31 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| NDJLHOFJ_2 | 69396 | 101668 | False | Siphoviridae | VOG6005, VOG0586, VOG1298, VOG0044, VOG3643, VOG0198, VOG4841, VOG4581, VOG1886, VOG0202, VOG4556, VOG4573, VOG4553, VOG0204, VOG0205, VOG0207, VOG4586, VOG0660, VOG4545, VOG4605, VOG4599, VOG10957, VOG8870, VOG9998, VOG4615, VOG0753, VOG0054, VOG1521 |
| NDJLHOFJ_2 | 369096 | 411731 | False | Siphoviridae | VOG4567, VOG9592, VOG7508, VOG4602, VOG9667, VOG4602, VOG6495, VOG9667, VOG3549, VOG1250, VOG0535, VOG0322, VOG6545, VOG5046, VOG0189, VOG6005, VOG0198, VOG6495, VOG2124, VOG3699, VOG10227, VOG0720, VOG4564, VOG4555, VOG1329, VOG4713, VOG9583, VOG0724, VOG0799, VOG0725, VOG6163, VOG4633, VOG4599, VOG4619, VOG4856, VOG9640, VOG0804, VOG4705, VOG4918, VOG0753, VOG0054, VOG0866, VOG6055 |
| NDJLHOFJ_3 | 310042 | 335426 | False | Siphoviridae | VOG0870, VOG8438, VOG4619, VOG0801, VOG0701, VOG9763, VOG6548, VOG0697, VOG0696, VOG0695, VOG4711, VOG9317, VOG0692, VOG0691, VOG0611, VOG0638, VOG1183, VOG0198, VOG3643, VOG3307, VOG0044 |
| NDJLHOFJ_3 | 338492 | 340163 | False | Unknown | VOG0186 |
| NDJLHOFJ_4 | 180756 | 204718 | False | Siphoviridae | VOG9998, VOG0254, VOG8870, VOG10957, VOG4599, VOG4605, VOG6163, VOG0660, VOG0209, VOG4586, VOG0207, VOG0205, VOG0204, VOG4553, VOG4573, VOG4556, VOG0202, VOG1886, VOG4581, VOG4841 |
| NDJLHOFJ_15 | 19844 | 43538 | False | Siphoviridae | VOG5657, VOG0054, VOG0753, VOG9998, VOG8870, VOG10957, VOG4599, VOG4605, VOG6163, VOG0209, VOG4586, VOG0207, VOG0205, VOG0204, VOG4568, VOG4556, VOG0202, VOG1886, VOG4581, VOG6716 |
Phigaro v2.4.0 (Database: Jan. 2024 release)