Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 2 | 0 | 0 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| GBDGAIBG_1 | 144722 | 146641 | tet(W) | ARO:3000194 | tet(W) | 99.69 | 100.00 | AJ222769.3 |
| GBDGAIBG_8 | 65086 | 68646 | Bifidobacterium adolescentis rpoB mutants conferring resistance to rifampicin | ARO:3004480 | Bado_rpoB_RIF | 98.48 | 100.00 | NC_008618.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| GBDGAIBG_1 | 144722 | 146641 | tet(W) | Doxycycline, Tetracycline, Minocycline | 99.95 | 100.00 | DQ060146 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| GBDGAIBG_1 | 144725 | 146641 | tet(W) | tetracycline resistance ribosomal protection protein Tet(W) | BLASTX | 99.84 | 100.00 | WP_009305318.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| GBDGAIBG_1 | 0.0 | 1.0 | 0.0 |
| GBDGAIBG_2 | 0.0 | 1.0 | 0.0 |
| GBDGAIBG_4 | 0.0 | 1.0 | 0.0 |
| GBDGAIBG_5 | 0.0 | 1.0 | 0.0 |
| GBDGAIBG_7 | 0.0 | 1.0 | 0.0 |
| GBDGAIBG_8 | 0.0 | 1.0 | 0.0 |
| GBDGAIBG_9 | 0.0 | 1.0 | 0.0 |
| GBDGAIBG_10 | 0.0 | 1.0 | 0.0 |
| GBDGAIBG_11 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| GBDGAIBG_5 | 416246 | 433898 | False | Siphoviridae | VOG2538, VOG2038, VOG3028, VOG4544, VOG0720, VOG4576, VOG4555, VOG4553, VOG5504, VOG1581, VOG4589, VOG4557, VOG4545, VOG2624, VOG3654 |
| GBDGAIBG_7 | 177674 | 193535 | False | Siphoviridae | VOG1581, VOG5504, VOG4319, VOG4555, VOG2894, VOG0720, VOG5101, VOG1574, VOG2043, VOG2038, VOG2902, VOG8722, VOG5733, VOG4693, VOG0226, VOG4360, VOG4600, VOG8486, VOG7246 |
Phigaro v2.4.0 (Database: Jan. 2024 release)