Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 2 | 0 | 0 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| AOLMIGDI_8 | 2477 | 6037 | Bifidobacterium adolescentis rpoB mutants conferring resistance to rifampicin | ARO:3004480 | Bado_rpoB_RIF | 98.48 | 100.00 | NC_008618.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| AOLMIGDI_13 | 28275 | 30193 | tet(O) | Doxycycline, Tetracycline, Minocycline | 99.74 | 99.95 | M18896 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| AOLMIGDI_1 | 0.0 | 1.0 | 0.0 |
| AOLMIGDI_2 | 0.0 | 1.0 | 0.0 |
| AOLMIGDI_3 | 0.0 | 1.0 | 0.0 |
| AOLMIGDI_4 | 0.0 | 1.0 | 0.0 |
| AOLMIGDI_5 | 0.0 | 1.0 | 0.0 |
| AOLMIGDI_6 | 0.0 | 1.0 | 0.0 |
| AOLMIGDI_7 | 0.0 | 1.0 | 0.0 |
| AOLMIGDI_8 | 0.0 | 1.0 | 0.0 |
| AOLMIGDI_9 | 0.0 | 1.0 | 0.0 |
| AOLMIGDI_10 | 0.0 | 1.0 | 0.0 |
| AOLMIGDI_11 | 0.0 | 1.0 | 0.0 |
| AOLMIGDI_12 | 0.0 | 1.0 | 0.0 |
| AOLMIGDI_13 | 0.0 | 1.0 | 0.0 |
| AOLMIGDI_14 | 0.0 | 1.0 | 0.0 |
| AOLMIGDI_15 | 0.0 | 1.0 | 0.0 |
| AOLMIGDI_17 | 0.0 | 1.0 | 0.0 |
| AOLMIGDI_18 | 0.0 | 1.0 | 0.0 |
| AOLMIGDI_20 | 0.0 | 1.0 | 0.0 |
| AOLMIGDI_21 | 0.0 | 1.0 | 0.0 |
| AOLMIGDI_23 | 0.0 | 1.0 | 0.0 |
| AOLMIGDI_24 | 1.0 | 0.0 | 1.0 |
| AOLMIGDI_25 | 1.0 | 0.0 | 1.0 |
| AOLMIGDI_27 | 1.0 | 0.0 | 1.0 |
| AOLMIGDI_31 | 0.0 | 1.0 | 0.0 |
| AOLMIGDI_32 | 0.0 | 1.0 | 0.0 |
| AOLMIGDI_33 | 0.0 | 1.0 | 0.0 |
| AOLMIGDI_34 | 0.0 | 1.0 | 0.0 |
| AOLMIGDI_35 | 0.0 | 1.0 | 0.0 |
| AOLMIGDI_36 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| AOLMIGDI_9 | 41732 | 69551 | False | Siphoviridae | VOG0275, VOG0731, VOG9502, VOG7888, VOG3298, VOG0979, VOG0933, VOG4599, VOG4605, VOG5793, VOG4582, VOG4557, VOG2639, VOG1159, VOG3409, VOG1581, VOG5504, VOG4553, VOG4555, VOG4576, VOG0720, VOG4544, VOG1154, VOG2038 |
| AOLMIGDI_20 | 2268 | 13719 | False | Siphoviridae | VOG5733, VOG7228, VOG9438, VOG2902, VOG1897, VOG2038, VOG2043, VOG1574, VOG5101, VOG0720, VOG2894, VOG4555, VOG4319 |
| AOLMIGDI_34 | 426845 | 444303 | False | Siphoviridae | VOG2038, VOG1154, VOG4544, VOG0720, VOG4576, VOG4555, VOG4553, VOG5504, VOG1581, VOG4589, VOG4557, VOG4545, VOG2624, VOG3654 |
Phigaro v2.4.0 (Database: Jan. 2024 release)