Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 2 | 0 | 0 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| PJAODGNG_11 | 45694 | 49254 | Bifidobacterium adolescentis rpoB mutants conferring resistance to rifampicin | ARO:3004480 | Bado_rpoB_RIF | 98.48 | 100.00 | NC_008618.1 |
| PJAODGNG_2 | 23361 | 25280 | tet(W) | ARO:3000194 | tet(W) | 99.84 | 100.00 | AJ222769.3 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| PJAODGNG_2 | 23361 | 25280 | tet(W) | Doxycycline, Tetracycline, Minocycline | 100.00 | 100.00 | DQ060146 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| PJAODGNG_2 | 23364 | 25280 | tet(W) | tetracycline resistance ribosomal protection protein Tet(W) | EXACTX | 100.00 | 100.00 | WP_009305318.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| PJAODGNG_1 | 0.0 | 1.0 | 0.0 |
| PJAODGNG_2 | 0.0 | 1.0 | 0.0 |
| PJAODGNG_3 | 0.0 | 1.0 | 0.0 |
| PJAODGNG_4 | 0.0 | 1.0 | 0.0 |
| PJAODGNG_6 | 0.0 | 1.0 | 0.0 |
| PJAODGNG_7 | 0.0 | 1.0 | 0.0 |
| PJAODGNG_8 | 0.0 | 1.0 | 0.0 |
| PJAODGNG_9 | 0.0 | 1.0 | 0.0 |
| PJAODGNG_10 | 0.0 | 1.0 | 0.0 |
| PJAODGNG_11 | 0.0 | 1.0 | 0.0 |
| PJAODGNG_12 | 0.0 | 1.0 | 0.0 |
| PJAODGNG_13 | 0.0 | 1.0 | 0.0 |
| PJAODGNG_14 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| PJAODGNG_10 | 400751 | 409914 | False | Siphoviridae | VOG0275, VOG4602, VOG3838, VOG1561, VOG2503, VOG4602, VOG0982, VOG4602 |
| PJAODGNG_10 | 419193 | 443103 | False | Siphoviridae | VOG3028, VOG4544, VOG0720, VOG4576, VOG4555, VOG3676, VOG1581, VOG3409, VOG1159, VOG4557, VOG8867, VOG8867, VOG6163, VOG9722, VOG3416, VOG10957 |
Phigaro v2.4.0 (Database: Jan. 2024 release)