Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 1 | 0 | 0 | 1.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| PAMIGPLM_19 | 64591 | 68151 | Bifidobacterium adolescentis rpoB mutants conferring resistance to rifampicin | ARO:3004480 | Bado_rpoB_RIF | 98.48 | 100.00 | NC_008618.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| PAMIGPLM_1 | 0.0 | 1.0 | 0.0 |
| PAMIGPLM_2 | 0.0 | 1.0 | 0.0 |
| PAMIGPLM_3 | 0.0 | 1.0 | 0.0 |
| PAMIGPLM_5 | 0.0 | 1.0 | 0.0 |
| PAMIGPLM_6 | 0.0 | 1.0 | 0.0 |
| PAMIGPLM_7 | 0.0 | 1.0 | 0.0 |
| PAMIGPLM_9 | 0.0 | 1.0 | 0.0 |
| PAMIGPLM_10 | 0.0 | 1.0 | 0.0 |
| PAMIGPLM_11 | 1.0 | 0.0 | 1.0 |
| PAMIGPLM_12 | 0.0 | 1.0 | 0.0 |
| PAMIGPLM_13 | 0.0 | 1.0 | 0.0 |
| PAMIGPLM_15 | 0.0 | 1.0 | 0.0 |
| PAMIGPLM_16 | 0.0 | 1.0 | 0.0 |
| PAMIGPLM_17 | 0.0 | 1.0 | 0.0 |
| PAMIGPLM_18 | 0.0 | 1.0 | 0.0 |
| PAMIGPLM_19 | 0.0 | 1.0 | 0.0 |
| PAMIGPLM_20 | 0.0 | 1.0 | 0.0 |
| PAMIGPLM_21 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| PAMIGPLM_15 | 422926 | 440334 | False | Siphoviridae | VOG2538, VOG2038, VOG3028, VOG4544, VOG0720, VOG4576, VOG4555, VOG4553, VOG5504, VOG1581, VOG4589, VOG4557, VOG4545, VOG2624 |
| PAMIGPLM_18 | 238617 | 256984 | False | Siphoviridae | VOG1581, VOG5504, VOG4319, VOG4555, VOG2894, VOG0720, VOG5101, VOG1574, VOG2043, VOG2038, VOG1897, VOG4559, VOG2902, VOG8722, VOG5733, VOG6108, VOG4693, VOG0226, VOG1309, VOG4600, VOG2124, VOG7246, VOG4552, VOG3671 |
Phigaro v2.4.0 (Database: Jan. 2024 release)