Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 1 | 1.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| CEDLNJDG_72 | 8958 | 8257 | WalR | 1.19e-108 | transcriptional regulatory protein | 80.34 | 99.57 | EPH95667 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| CEDLNJDG_26 | 5493 | 6149 | rep28 | 657 / 936 | 100.00 | CP005948 |
| CEDLNJDG_32 | 1702 | 2657 | repUS64 | 962 / 954 | 83.06 | JN601038 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| CEDLNJDG_1 | 0.0 | 1.0 | 0.0 |
| CEDLNJDG_2 | 0.0 | 1.0 | 0.0 |
| CEDLNJDG_3 | 0.0 | 1.0 | 0.0 |
| CEDLNJDG_4 | 0.0 | 1.0 | 0.0 |
| CEDLNJDG_5 | 0.0 | 1.0 | 0.0 |
| CEDLNJDG_6 | 0.0 | 1.0 | 0.0 |
| CEDLNJDG_7 | 0.0 | 1.0 | 0.0 |
| CEDLNJDG_8 | 0.0 | 1.0 | 0.0 |
| CEDLNJDG_9 | 0.0 | 1.0 | 0.0 |
| CEDLNJDG_10 | 0.0 | 1.0 | 0.0 |
| CEDLNJDG_11 | 0.0 | 1.0 | 0.0 |
| CEDLNJDG_12 | 0.0 | 1.0 | 0.0 |
| CEDLNJDG_13 | 0.0 | 1.0 | 0.0 |
| CEDLNJDG_14 | 0.0 | 1.0 | 0.0 |
| CEDLNJDG_15 | 0.0 | 1.0 | 0.0 |
| CEDLNJDG_16 | 0.0 | 1.0 | 0.0 |
| CEDLNJDG_17 | 0.0 | 1.0 | 0.0 |
| CEDLNJDG_18 | 1.0 | 0.0 | 1.0 |
| CEDLNJDG_19 | 0.0 | 1.0 | 0.0 |
| CEDLNJDG_20 | 1.0 | 0.0 | 1.0 |
| CEDLNJDG_21 | 1.0 | 0.0 | 1.0 |
| CEDLNJDG_22 | 1.0 | 0.0 | 1.0 |
| CEDLNJDG_23 | 0.0 | 1.0 | 0.0 |
| CEDLNJDG_24 | 0.0 | 1.0 | 0.0 |
| CEDLNJDG_25 | 1.0 | 0.0 | 1.0 |
| CEDLNJDG_26 | 1.0 | 0.0 | 1.0 |
| CEDLNJDG_27 | 1.0 | 0.0 | 1.0 |
| CEDLNJDG_28 | 1.0 | 0.0 | 1.0 |
| CEDLNJDG_29 | 1.0 | 0.0 | 1.0 |
| CEDLNJDG_30 | 1.0 | 0.0 | 1.0 |
| CEDLNJDG_31 | 1.0 | 0.0 | 1.0 |
| CEDLNJDG_32 | 1.0 | 0.0 | 1.0 |
| CEDLNJDG_33 | 1.0 | 0.0 | 1.0 |
| CEDLNJDG_34 | 0.0 | 1.0 | 0.0 |
| CEDLNJDG_35 | 1.0 | 0.0 | 1.0 |
| CEDLNJDG_36 | 1.0 | 0.0 | 1.0 |
| CEDLNJDG_37 | 1.0 | 0.0 | 1.0 |
| CEDLNJDG_39 | 1.0 | 0.0 | 1.0 |
| CEDLNJDG_40 | 1.0 | 0.0 | 1.0 |
| CEDLNJDG_41 | 0.0 | 1.0 | 0.0 |
| CEDLNJDG_42 | 1.0 | 0.0 | 1.0 |
| CEDLNJDG_44 | 1.0 | 0.0 | 1.0 |
| CEDLNJDG_45 | 0.0 | 1.0 | 0.0 |
| CEDLNJDG_46 | 1.0 | 0.0 | 1.0 |
| CEDLNJDG_47 | 1.0 | 0.0 | 1.0 |
| CEDLNJDG_48 | 1.0 | 0.0 | 1.0 |
| CEDLNJDG_49 | 1.0 | 0.0 | 1.0 |
| CEDLNJDG_50 | 1.0 | 0.0 | 1.0 |
| CEDLNJDG_56 | 0.0 | 1.0 | 0.0 |
| CEDLNJDG_67 | 0.0 | 1.0 | 0.0 |
| CEDLNJDG_72 | 0.0 | 1.0 | 0.0 |
| CEDLNJDG_73 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| CEDLNJDG_2 | 48145 | 60628 | False | Siphoviridae | VOG4632, VOG4609, VOG0205, VOG4841, VOG4581, VOG4544, VOG5051, VOG4556, VOG4568, VOG0204, VOG0198, VOG8908 |
Phigaro v2.4.0 (Database: Jan. 2024 release)