Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 8 | 0 | 0 | 8.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| MMDJCEPO_4 | 160465 | 161367 | cepA | ARO:3003559 | cepA | 100.00 | 100.00 | U05883.1 |
| MMDJCEPO_11 | 63408 | 65333 | tet(Q) | ARO:3000191 | tet(Q) | 89.08 | 97.56 | Z21523.1 |
| MMDJCEPO_11 | 62322 | 63122 | ErmF | ARO:3000498 | ErmF | 98.50 | 100.00 | M17124.1 |
| MMDJCEPO_14 | 47781 | 48746 | CfxA3 | ARO:3003003 | CfxA3 | 98.76 | 100.00 | AF472622.2 |
| MMDJCEPO_1 | 2211 | 2705 | nimD | ARO:3007106 | nimD | 96.95 | 100.00 | X76949.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| MMDJCEPO_18 | 11526 | 13450 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 99.90 | 99.95 | Z21523 |
| MMDJCEPO_4 | 160465 | 161367 | cepA | Unknown Beta-lactam | 99.89 | 100.00 | L13472 |
| MMDJCEPO_23 | 385324 | 386138 | sul2 | Sulfamethoxazole | 99.88 | 99.88 | AY034138 |
| MMDJCEPO_11 | 62322 | 63122 | erm(F) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.50 | 100.00 | M17808 |
| MMDJCEPO_14 | 47781 | 48746 | cfxA3 | Ampicillin | 99.17 | 99.69 | AF472622 |
| MMDJCEPO_14 | 47781 | 48746 | cfxA4 | Unknown Beta-lactam | 99.17 | 99.69 | AY769933 |
| MMDJCEPO_14 | 47781 | 48746 | cfxA5 | Unknown Beta-lactam | 99.17 | 99.69 | AY769934 |
| MMDJCEPO_1 | 2211 | 2705 | nimD | Metronidazole | 98.59 | 100.00 | X76949 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| MMDJCEPO_4 | 160468 | 161367 | cepA | CepA family extended-spectrum class A beta-lactamase | EXACTX | 100.00 | 100.00 | WP_005795628.1 |
| MMDJCEPO_23 | 385455 | 386138 | sul2 | sulfonamide-resistant dihydropteroate synthase Sul2 | PARTIALX | 99.12 | 84.13 | WP_001043260.1 |
| MMDJCEPO_11 | 62322 | 63119 | erm(F) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(F) | BLASTX | 98.87 | 100.00 | WP_002682030.1 |
| MMDJCEPO_14 | 47784 | 48746 | cfxA | CfxA family broad-spectrum class A beta-lactamase | BLASTX | 98.76 | 100.00 | WP_004339683.1 |
| MMDJCEPO_1 | 2214 | 2705 | nimD | 5-nitroimidazole reductase NimD | BLASTX | 96.95 | 100.00 | WP_063854492.1 |
| MMDJCEPO_11 | 63408 | 65330 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 89.55 | 100.00 | WP_063856407.1 |
| MMDJCEPO_14 | 817853 | 818662 | sul2 | sulfonamide-resistant dihydropteroate synthase Sul2 | INTERNAL_STOP | 87.55 | 100.00 | WP_001043260.1 |
| MMDJCEPO_23 | 198303 | 198860 | sul2 | sulfonamide-resistant dihydropteroate synthase Sul2 | PARTIALX | 97.85 | 68.63 | WP_001043260.1 |
| MMDJCEPO_5 | 35576 | 36133 | sul2 | sulfonamide-resistant dihydropteroate synthase Sul2 | PARTIALX | 97.85 | 68.63 | WP_001043260.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| MMDJCEPO_1 | 1.0 | 0.0 | 1.0 |
| MMDJCEPO_2 | 1.0 | 0.0 | 1.0 |
| MMDJCEPO_3 | 1.0 | 0.0 | 1.0 |
| MMDJCEPO_4 | 0.0 | 1.0 | 0.0 |
| MMDJCEPO_5 | 0.0 | 1.0 | 0.0 |
| MMDJCEPO_6 | 0.0 | 1.0 | 0.0 |
| MMDJCEPO_7 | 0.0 | 1.0 | 0.0 |
| MMDJCEPO_8 | 0.0 | 1.0 | 0.0 |
| MMDJCEPO_9 | 0.0 | 1.0 | 0.0 |
| MMDJCEPO_10 | 0.0 | 1.0 | 0.0 |
| MMDJCEPO_11 | 0.0 | 1.0 | 0.0 |
| MMDJCEPO_12 | 0.0 | 1.0 | 0.0 |
| MMDJCEPO_13 | 0.0 | 1.0 | 0.0 |
| MMDJCEPO_14 | 0.0 | 1.0 | 0.0 |
| MMDJCEPO_15 | 0.0 | 1.0 | 0.0 |
| MMDJCEPO_16 | 0.0 | 1.0 | 0.0 |
| MMDJCEPO_17 | 0.0 | 1.0 | 0.0 |
| MMDJCEPO_18 | 0.0 | 1.0 | 0.0 |
| MMDJCEPO_19 | 0.0 | 1.0 | 0.0 |
| MMDJCEPO_20 | 0.0 | 1.0 | 0.0 |
| MMDJCEPO_21 | 0.0 | 1.0 | 0.0 |
| MMDJCEPO_22 | 0.0 | 1.0 | 0.0 |
| MMDJCEPO_23 | 0.0 | 1.0 | 0.0 |
| MMDJCEPO_24 | 0.0 | 1.0 | 0.0 |
| MMDJCEPO_25 | 0.0 | 1.0 | 0.0 |
| MMDJCEPO_26 | 0.0 | 1.0 | 0.0 |
| MMDJCEPO_27 | 0.0 | 1.0 | 0.0 |
| MMDJCEPO_28 | 0.0 | 1.0 | 0.0 |
| MMDJCEPO_29 | 0.0 | 1.0 | 0.0 |
| MMDJCEPO_30 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| MMDJCEPO_29 | 163360 | 164295 | False | Unknown | VOG8241 |
Phigaro v2.4.0 (Database: Jan. 2024 release)