Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 2 | 0 | 0 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| NBKMCFIE_84 | 59186 | 61105 | tet(O) | ARO:3000190 | tet(O) | 97.50 | 100.00 | M18896.2 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| NBKMCFIE_84 | 59186 | 61105 | tet(O) | Doxycycline, Tetracycline, Minocycline | 99.27 | 100.00 | Y07780 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| NBKMCFIE_84 | 59189 | 61105 | tet(O) | tetracycline resistance ribosomal protection protein Tet(O) | BLASTX | 99.06 | 100.00 | WP_014636291.1 |
| NBKMCFIE_134 | 4290 | 4490 | vanU-G | glycopeptide resistance transcriptional regulator VanU-G | PARTIALX | 80.60 | 89.33 | WP_021418929.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| NBKMCFIE_1 | 0.0 | 1.0 | 0.0 |
| NBKMCFIE_2 | 0.0 | 1.0 | 0.0 |
| NBKMCFIE_3 | 1.0 | 0.0 | 1.0 |
| NBKMCFIE_4 | 1.0 | 0.0 | 1.0 |
| NBKMCFIE_5 | 1.0 | 0.0 | 1.0 |
| NBKMCFIE_6 | 0.0 | 1.0 | 0.0 |
| NBKMCFIE_7 | 1.0 | 0.0 | 1.0 |
| NBKMCFIE_8 | 1.0 | 0.0 | 1.0 |
| NBKMCFIE_9 | 0.0 | 1.0 | 0.0 |
| NBKMCFIE_10 | 0.0 | 1.0 | 0.0 |
| NBKMCFIE_11 | 1.0 | 0.0 | 1.0 |
| NBKMCFIE_13 | 0.0 | 1.0 | 0.0 |
| NBKMCFIE_14 | 1.0 | 0.0 | 1.0 |
| NBKMCFIE_17 | 1.0 | 0.0 | 1.0 |
| NBKMCFIE_24 | 0.0 | 1.0 | 0.0 |
| NBKMCFIE_35 | 0.0 | 1.0 | 0.0 |
| NBKMCFIE_46 | 0.0 | 1.0 | 0.0 |
| NBKMCFIE_56 | 0.0 | 1.0 | 0.0 |
| NBKMCFIE_67 | 0.0 | 1.0 | 0.0 |
| NBKMCFIE_78 | 0.0 | 1.0 | 0.0 |
| NBKMCFIE_83 | 0.0 | 1.0 | 0.0 |
| NBKMCFIE_84 | 0.0 | 1.0 | 0.0 |
| NBKMCFIE_85 | 0.0 | 1.0 | 0.0 |
| NBKMCFIE_86 | 0.0 | 1.0 | 0.0 |
| NBKMCFIE_87 | 0.0 | 1.0 | 0.0 |
| NBKMCFIE_88 | 0.0 | 1.0 | 0.0 |
| NBKMCFIE_89 | 0.0 | 1.0 | 0.0 |
| NBKMCFIE_90 | 0.0 | 1.0 | 0.0 |
| NBKMCFIE_91 | 0.0 | 1.0 | 0.0 |
| NBKMCFIE_92 | 0.0 | 1.0 | 0.0 |
| NBKMCFIE_93 | 0.0 | 1.0 | 0.0 |
| NBKMCFIE_94 | 0.0 | 1.0 | 0.0 |
| NBKMCFIE_95 | 0.0 | 1.0 | 0.0 |
| NBKMCFIE_96 | 0.0 | 1.0 | 0.0 |
| NBKMCFIE_97 | 0.0 | 1.0 | 0.0 |
| NBKMCFIE_98 | 0.0 | 1.0 | 0.0 |
| NBKMCFIE_99 | 0.0 | 1.0 | 0.0 |
| NBKMCFIE_100 | 0.0 | 1.0 | 0.0 |
| NBKMCFIE_101 | 0.0 | 1.0 | 0.0 |
| NBKMCFIE_102 | 0.0 | 1.0 | 0.0 |
| NBKMCFIE_103 | 0.0 | 1.0 | 0.0 |
| NBKMCFIE_104 | 0.0 | 1.0 | 0.0 |
| NBKMCFIE_105 | 0.0 | 1.0 | 0.0 |
| NBKMCFIE_106 | 0.0 | 1.0 | 0.0 |
| NBKMCFIE_107 | 0.0 | 1.0 | 0.0 |
| NBKMCFIE_108 | 0.0 | 1.0 | 0.0 |
| NBKMCFIE_109 | 0.0 | 1.0 | 0.0 |
| NBKMCFIE_110 | 0.0 | 1.0 | 0.0 |
| NBKMCFIE_111 | 0.0 | 1.0 | 0.0 |
| NBKMCFIE_112 | 0.0 | 1.0 | 0.0 |
| NBKMCFIE_113 | 0.0 | 1.0 | 0.0 |
| NBKMCFIE_114 | 0.0 | 1.0 | 0.0 |
| NBKMCFIE_115 | 0.0 | 1.0 | 0.0 |
| NBKMCFIE_116 | 0.0 | 1.0 | 0.0 |
| NBKMCFIE_117 | 1.0 | 0.0 | 1.0 |
| NBKMCFIE_118 | 0.0 | 1.0 | 0.0 |
| NBKMCFIE_119 | 0.0 | 1.0 | 0.0 |
| NBKMCFIE_120 | 0.0 | 1.0 | 0.0 |
| NBKMCFIE_121 | 0.0 | 1.0 | 0.0 |
| NBKMCFIE_122 | 0.0 | 1.0 | 0.0 |
| NBKMCFIE_123 | 0.0 | 1.0 | 0.0 |
| NBKMCFIE_124 | 0.0 | 1.0 | 0.0 |
| NBKMCFIE_125 | 0.0 | 1.0 | 0.0 |
| NBKMCFIE_126 | 1.0 | 0.0 | 1.0 |
| NBKMCFIE_127 | 0.0 | 1.0 | 0.0 |
| NBKMCFIE_128 | 0.0 | 1.0 | 0.0 |
| NBKMCFIE_129 | 0.0 | 1.0 | 0.0 |
| NBKMCFIE_130 | 0.0 | 1.0 | 0.0 |
| NBKMCFIE_131 | 0.0 | 1.0 | 0.0 |
| NBKMCFIE_132 | 0.0 | 1.0 | 0.0 |
| NBKMCFIE_133 | 1.0 | 0.0 | 1.0 |
| NBKMCFIE_134 | 0.0 | 1.0 | 0.0 |
| NBKMCFIE_135 | 0.0 | 1.0 | 0.0 |
| NBKMCFIE_136 | 0.0 | 1.0 | 0.0 |
| NBKMCFIE_137 | 1.0 | 0.0 | 1.0 |
| NBKMCFIE_138 | 0.0 | 1.0 | 0.0 |
| NBKMCFIE_139 | 1.0 | 0.0 | 1.0 |
| NBKMCFIE_140 | 0.0 | 1.0 | 0.0 |
| NBKMCFIE_141 | 1.0 | 0.0 | 1.0 |
| NBKMCFIE_142 | 1.0 | 0.0 | 1.0 |
| NBKMCFIE_143 | 1.0 | 0.0 | 1.0 |
| NBKMCFIE_144 | 1.0 | 0.0 | 1.0 |
| NBKMCFIE_145 | 1.0 | 0.0 | 1.0 |
| NBKMCFIE_146 | 0.0 | 1.0 | 0.0 |
| NBKMCFIE_147 | 0.0 | 1.0 | 0.0 |
| NBKMCFIE_148 | 0.0 | 1.0 | 0.0 |
| NBKMCFIE_149 | 0.0 | 1.0 | 0.0 |
| NBKMCFIE_150 | 0.0 | 1.0 | 0.0 |
| NBKMCFIE_151 | 1.0 | 0.0 | 1.0 |
| NBKMCFIE_152 | 0.0 | 1.0 | 0.0 |
| NBKMCFIE_153 | 1.0 | 0.0 | 1.0 |
| NBKMCFIE_155 | 0.0 | 1.0 | 0.0 |
| NBKMCFIE_156 | 1.0 | 0.0 | 1.0 |
| NBKMCFIE_157 | 1.0 | 0.0 | 1.0 |
| NBKMCFIE_158 | 1.0 | 0.0 | 1.0 |
| NBKMCFIE_159 | 1.0 | 0.0 | 1.0 |
| NBKMCFIE_160 | 0.0 | 1.0 | 0.0 |
| NBKMCFIE_161 | 0.0 | 1.0 | 0.0 |
| NBKMCFIE_162 | 1.0 | 0.0 | 1.0 |
| NBKMCFIE_163 | 0.0 | 1.0 | 0.0 |
| NBKMCFIE_164 | 0.0 | 1.0 | 0.0 |
| NBKMCFIE_165 | 1.0 | 0.0 | 1.0 |
| NBKMCFIE_166 | 1.0 | 0.0 | 1.0 |
| NBKMCFIE_167 | 1.0 | 0.0 | 1.0 |
| NBKMCFIE_168 | 0.0 | 1.0 | 0.0 |
| NBKMCFIE_169 | 1.0 | 0.0 | 1.0 |
| NBKMCFIE_170 | 0.0 | 1.0 | 0.0 |
| NBKMCFIE_171 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| No hit found | |||||
Phigaro v2.4.0 (Database: Jan. 2024 release)