Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 1 | 0 | 0 | 1.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| JOEJGJBC_96 | 124542 | 128105 | Bifidobacterium adolescentis rpoB mutants conferring resistance to rifampicin | ARO:3004480 | Bado_rpoB_RIF | 92.48 | 100.08 | NC_008618.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| JOEJGJBC_1 | 0.0 | 1.0 | 0.0 |
| JOEJGJBC_2 | 0.0 | 1.0 | 0.0 |
| JOEJGJBC_12 | 0.0 | 1.0 | 0.0 |
| JOEJGJBC_18 | 0.0 | 1.0 | 0.0 |
| JOEJGJBC_25 | 0.0 | 1.0 | 0.0 |
| JOEJGJBC_34 | 0.0 | 1.0 | 0.0 |
| JOEJGJBC_42 | 0.0 | 1.0 | 0.0 |
| JOEJGJBC_50 | 0.0 | 1.0 | 0.0 |
| JOEJGJBC_59 | 0.0 | 1.0 | 0.0 |
| JOEJGJBC_67 | 0.0 | 1.0 | 0.0 |
| JOEJGJBC_74 | 0.0 | 1.0 | 0.0 |
| JOEJGJBC_75 | 0.0 | 1.0 | 0.0 |
| JOEJGJBC_76 | 0.0 | 1.0 | 0.0 |
| JOEJGJBC_77 | 0.0 | 1.0 | 0.0 |
| JOEJGJBC_78 | 0.0 | 1.0 | 0.0 |
| JOEJGJBC_79 | 0.0 | 1.0 | 0.0 |
| JOEJGJBC_80 | 0.0 | 1.0 | 0.0 |
| JOEJGJBC_81 | 0.0 | 1.0 | 0.0 |
| JOEJGJBC_82 | 0.0 | 1.0 | 0.0 |
| JOEJGJBC_83 | 0.0 | 1.0 | 0.0 |
| JOEJGJBC_84 | 0.0 | 1.0 | 0.0 |
| JOEJGJBC_85 | 0.0 | 1.0 | 0.0 |
| JOEJGJBC_86 | 0.0 | 1.0 | 0.0 |
| JOEJGJBC_87 | 0.0 | 1.0 | 0.0 |
| JOEJGJBC_88 | 0.0 | 1.0 | 0.0 |
| JOEJGJBC_89 | 0.0 | 1.0 | 0.0 |
| JOEJGJBC_90 | 0.0 | 1.0 | 0.0 |
| JOEJGJBC_91 | 0.0 | 1.0 | 0.0 |
| JOEJGJBC_92 | 0.0 | 1.0 | 0.0 |
| JOEJGJBC_93 | 0.0 | 1.0 | 0.0 |
| JOEJGJBC_94 | 0.0 | 1.0 | 0.0 |
| JOEJGJBC_95 | 0.0 | 1.0 | 0.0 |
| JOEJGJBC_96 | 0.0 | 1.0 | 0.0 |
| JOEJGJBC_97 | 1.0 | 0.0 | 1.0 |
| JOEJGJBC_99 | 1.0 | 0.0 | 1.0 |
| JOEJGJBC_101 | 1.0 | 0.0 | 1.0 |
| JOEJGJBC_102 | 0.0 | 1.0 | 0.0 |
| JOEJGJBC_103 | 1.0 | 0.0 | 1.0 |
| JOEJGJBC_107 | 0.0 | 1.0 | 0.0 |
| JOEJGJBC_117 | 0.0 | 1.0 | 0.0 |
| JOEJGJBC_125 | 0.0 | 1.0 | 0.0 |
| JOEJGJBC_135 | 0.0 | 1.0 | 0.0 |
| JOEJGJBC_144 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| JOEJGJBC_77 | 34565 | 42279 | False | Siphoviridae | VOG1648, VOG4910, VOG0275, VOG0585, VOG7641 |
Phigaro v2.4.0 (Database: Jan. 2024 release)