Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 1 | 0 | 0 | 1.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| GBMFHLGD_50 | 3020 | 6583 | Bifidobacterium adolescentis rpoB mutants conferring resistance to rifampicin | ARO:3004480 | Bado_rpoB_RIF | 92.48 | 100.08 | NC_008618.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| GBMFHLGD_1 | 0.0 | 1.0 | 0.0 |
| GBMFHLGD_2 | 0.0 | 1.0 | 0.0 |
| GBMFHLGD_11 | 0.0 | 1.0 | 0.0 |
| GBMFHLGD_19 | 0.0 | 1.0 | 0.0 |
| GBMFHLGD_22 | 0.0 | 1.0 | 0.0 |
| GBMFHLGD_23 | 0.0 | 1.0 | 0.0 |
| GBMFHLGD_24 | 0.0 | 1.0 | 0.0 |
| GBMFHLGD_25 | 0.0 | 1.0 | 0.0 |
| GBMFHLGD_26 | 0.0 | 1.0 | 0.0 |
| GBMFHLGD_27 | 0.0 | 1.0 | 0.0 |
| GBMFHLGD_28 | 0.0 | 1.0 | 0.0 |
| GBMFHLGD_29 | 0.0 | 1.0 | 0.0 |
| GBMFHLGD_30 | 0.0 | 1.0 | 0.0 |
| GBMFHLGD_31 | 0.0 | 1.0 | 0.0 |
| GBMFHLGD_32 | 0.0 | 1.0 | 0.0 |
| GBMFHLGD_33 | 0.0 | 1.0 | 0.0 |
| GBMFHLGD_34 | 0.0 | 1.0 | 0.0 |
| GBMFHLGD_35 | 0.0 | 1.0 | 0.0 |
| GBMFHLGD_36 | 0.0 | 1.0 | 0.0 |
| GBMFHLGD_37 | 0.0 | 1.0 | 0.0 |
| GBMFHLGD_38 | 0.0 | 1.0 | 0.0 |
| GBMFHLGD_39 | 0.0 | 1.0 | 0.0 |
| GBMFHLGD_40 | 0.0 | 1.0 | 0.0 |
| GBMFHLGD_41 | 0.0 | 1.0 | 0.0 |
| GBMFHLGD_42 | 0.0 | 1.0 | 0.0 |
| GBMFHLGD_43 | 0.0 | 1.0 | 0.0 |
| GBMFHLGD_44 | 0.0 | 1.0 | 0.0 |
| GBMFHLGD_45 | 0.0 | 1.0 | 0.0 |
| GBMFHLGD_46 | 0.0 | 1.0 | 0.0 |
| GBMFHLGD_47 | 0.0 | 1.0 | 0.0 |
| GBMFHLGD_48 | 0.0 | 1.0 | 0.0 |
| GBMFHLGD_50 | 0.0 | 1.0 | 0.0 |
| GBMFHLGD_51 | 0.0 | 1.0 | 0.0 |
| GBMFHLGD_52 | 1.0 | 0.0 | 1.0 |
| GBMFHLGD_53 | 1.0 | 0.0 | 1.0 |
| GBMFHLGD_54 | 0.0 | 1.0 | 0.0 |
| GBMFHLGD_55 | 0.0 | 1.0 | 0.0 |
| GBMFHLGD_56 | 1.0 | 0.0 | 1.0 |
| GBMFHLGD_61 | 0.0 | 1.0 | 0.0 |
| GBMFHLGD_72 | 0.0 | 1.0 | 0.0 |
| GBMFHLGD_77 | 0.0 | 1.0 | 0.0 |
| GBMFHLGD_85 | 0.0 | 1.0 | 0.0 |
| GBMFHLGD_90 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| GBMFHLGD_31 | 6407 | 14121 | False | Unknown | VOG7642, VOG7641, VOG0585, VOG0275, VOG4910 |
Phigaro v2.4.0 (Database: Jan. 2024 release)