Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 1 | 0 | 0 | 1.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| CGIKBPPL_271 | 3020 | 6583 | Bifidobacterium adolescentis rpoB mutants conferring resistance to rifampicin | ARO:3004480 | Bado_rpoB_RIF | 92.48 | 100.08 | NC_008618.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| CGIKBPPL_302 | 12 | 244 | Col(BS512) | 233 / 233 | 99.57 | NC010656 |
| CGIKBPPL_280 | 289 | 547 | Col(MG828) | 260 / 262 | 95.00 | NC008486 |
| CGIKBPPL_287 | 243 | 396 | Col156 | 154 / 154 | 94.81 | NC009781 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| CGIKBPPL_1 | 0.0 | 1.0 | 0.0 |
| CGIKBPPL_2 | 0.0 | 1.0 | 0.0 |
| CGIKBPPL_13 | 0.0 | 1.0 | 0.0 |
| CGIKBPPL_22 | 0.0 | 1.0 | 0.0 |
| CGIKBPPL_32 | 0.0 | 1.0 | 0.0 |
| CGIKBPPL_40 | 0.0 | 1.0 | 0.0 |
| CGIKBPPL_50 | 0.0 | 1.0 | 0.0 |
| CGIKBPPL_61 | 0.0 | 1.0 | 0.0 |
| CGIKBPPL_72 | 0.0 | 1.0 | 0.0 |
| CGIKBPPL_82 | 0.0 | 1.0 | 0.0 |
| CGIKBPPL_91 | 0.0 | 1.0 | 0.0 |
| CGIKBPPL_101 | 0.0 | 1.0 | 0.0 |
| CGIKBPPL_102 | 0.0 | 1.0 | 0.0 |
| CGIKBPPL_111 | 0.0 | 1.0 | 0.0 |
| CGIKBPPL_121 | 0.0 | 1.0 | 0.0 |
| CGIKBPPL_128 | 0.0 | 1.0 | 0.0 |
| CGIKBPPL_139 | 0.0 | 1.0 | 0.0 |
| CGIKBPPL_150 | 0.0 | 1.0 | 0.0 |
| CGIKBPPL_157 | 0.0 | 1.0 | 0.0 |
| CGIKBPPL_166 | 0.0 | 1.0 | 0.0 |
| CGIKBPPL_176 | 0.0 | 1.0 | 0.0 |
| CGIKBPPL_185 | 0.0 | 1.0 | 0.0 |
| CGIKBPPL_195 | 0.0 | 1.0 | 0.0 |
| CGIKBPPL_196 | 0.0 | 1.0 | 0.0 |
| CGIKBPPL_207 | 0.0 | 1.0 | 0.0 |
| CGIKBPPL_218 | 0.0 | 1.0 | 0.0 |
| CGIKBPPL_229 | 0.0 | 1.0 | 0.0 |
| CGIKBPPL_240 | 0.0 | 1.0 | 0.0 |
| CGIKBPPL_248 | 0.0 | 1.0 | 0.0 |
| CGIKBPPL_256 | 0.0 | 1.0 | 0.0 |
| CGIKBPPL_265 | 0.0 | 1.0 | 0.0 |
| CGIKBPPL_270 | 0.0 | 1.0 | 0.0 |
| CGIKBPPL_271 | 0.0 | 1.0 | 0.0 |
| CGIKBPPL_272 | 0.0 | 1.0 | 0.0 |
| CGIKBPPL_273 | 1.0 | 0.0 | 1.0 |
| CGIKBPPL_275 | 1.0 | 0.0 | 1.0 |
| CGIKBPPL_276 | 0.0 | 1.0 | 0.0 |
| CGIKBPPL_277 | 0.0 | 1.0 | 0.0 |
| CGIKBPPL_278 | 1.0 | 0.0 | 1.0 |
| CGIKBPPL_280 | 1.0 | 0.0 | 1.0 |
| CGIKBPPL_282 | 0.0 | 1.0 | 0.0 |
| CGIKBPPL_293 | 0.0 | 1.0 | 0.0 |
| CGIKBPPL_304 | 0.0 | 1.0 | 0.0 |
| CGIKBPPL_315 | 0.0 | 1.0 | 0.0 |
| CGIKBPPL_325 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| CGIKBPPL_111 | 34565 | 42279 | False | Siphoviridae | VOG1648, VOG4910, VOG0275, VOG0585, VOG7641 |
Phigaro v2.4.0 (Database: Jan. 2024 release)