Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 1 | 0 | 0 | 1.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| LMJCFAKP_98 | 124819 | 128382 | Bifidobacterium adolescentis rpoB mutants conferring resistance to rifampicin | ARO:3004480 | Bado_rpoB_RIF | 92.48 | 100.08 | NC_008618.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| LMJCFAKP_1 | 0.0 | 1.0 | 0.0 |
| LMJCFAKP_2 | 0.0 | 1.0 | 0.0 |
| LMJCFAKP_13 | 0.0 | 1.0 | 0.0 |
| LMJCFAKP_24 | 0.0 | 1.0 | 0.0 |
| LMJCFAKP_35 | 0.0 | 1.0 | 0.0 |
| LMJCFAKP_46 | 0.0 | 1.0 | 0.0 |
| LMJCFAKP_57 | 0.0 | 1.0 | 0.0 |
| LMJCFAKP_68 | 0.0 | 1.0 | 0.0 |
| LMJCFAKP_73 | 0.0 | 1.0 | 0.0 |
| LMJCFAKP_74 | 0.0 | 1.0 | 0.0 |
| LMJCFAKP_75 | 0.0 | 1.0 | 0.0 |
| LMJCFAKP_76 | 0.0 | 1.0 | 0.0 |
| LMJCFAKP_77 | 0.0 | 1.0 | 0.0 |
| LMJCFAKP_78 | 0.0 | 1.0 | 0.0 |
| LMJCFAKP_79 | 0.0 | 1.0 | 0.0 |
| LMJCFAKP_80 | 0.0 | 1.0 | 0.0 |
| LMJCFAKP_81 | 0.0 | 1.0 | 0.0 |
| LMJCFAKP_82 | 0.0 | 1.0 | 0.0 |
| LMJCFAKP_83 | 0.0 | 1.0 | 0.0 |
| LMJCFAKP_84 | 0.0 | 1.0 | 0.0 |
| LMJCFAKP_85 | 0.0 | 1.0 | 0.0 |
| LMJCFAKP_86 | 0.0 | 1.0 | 0.0 |
| LMJCFAKP_87 | 0.0 | 1.0 | 0.0 |
| LMJCFAKP_88 | 0.0 | 1.0 | 0.0 |
| LMJCFAKP_89 | 0.0 | 1.0 | 0.0 |
| LMJCFAKP_90 | 0.0 | 1.0 | 0.0 |
| LMJCFAKP_91 | 0.0 | 1.0 | 0.0 |
| LMJCFAKP_92 | 0.0 | 1.0 | 0.0 |
| LMJCFAKP_93 | 0.0 | 1.0 | 0.0 |
| LMJCFAKP_94 | 0.0 | 1.0 | 0.0 |
| LMJCFAKP_95 | 0.0 | 1.0 | 0.0 |
| LMJCFAKP_96 | 0.0 | 1.0 | 0.0 |
| LMJCFAKP_98 | 0.0 | 1.0 | 0.0 |
| LMJCFAKP_99 | 0.0 | 1.0 | 0.0 |
| LMJCFAKP_100 | 1.0 | 0.0 | 1.0 |
| LMJCFAKP_101 | 1.0 | 0.0 | 1.0 |
| LMJCFAKP_102 | 0.0 | 1.0 | 0.0 |
| LMJCFAKP_103 | 0.0 | 1.0 | 0.0 |
| LMJCFAKP_104 | 1.0 | 0.0 | 1.0 |
| LMJCFAKP_108 | 0.0 | 1.0 | 0.0 |
| LMJCFAKP_118 | 0.0 | 1.0 | 0.0 |
| LMJCFAKP_129 | 0.0 | 1.0 | 0.0 |
| LMJCFAKP_140 | 0.0 | 1.0 | 0.0 |
| LMJCFAKP_151 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| LMJCFAKP_78 | 6407 | 14121 | False | Unknown | VOG7642, VOG7641, VOG0585, VOG0275, VOG4910 |
Phigaro v2.4.0 (Database: Jan. 2024 release)