Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 1 | 0 | 0 | 1.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| CEFAAAML_74 | 124542 | 128105 | Bifidobacterium adolescentis rpoB mutants conferring resistance to rifampicin | ARO:3004480 | Bado_rpoB_RIF | 92.48 | 100.08 | NC_008618.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| CEFAAAML_1 | 0.0 | 1.0 | 0.0 |
| CEFAAAML_2 | 0.0 | 1.0 | 0.0 |
| CEFAAAML_13 | 0.0 | 1.0 | 0.0 |
| CEFAAAML_24 | 0.0 | 1.0 | 0.0 |
| CEFAAAML_35 | 0.0 | 1.0 | 0.0 |
| CEFAAAML_46 | 0.0 | 1.0 | 0.0 |
| CEFAAAML_48 | 0.0 | 1.0 | 0.0 |
| CEFAAAML_49 | 0.0 | 1.0 | 0.0 |
| CEFAAAML_50 | 0.0 | 1.0 | 0.0 |
| CEFAAAML_51 | 0.0 | 1.0 | 0.0 |
| CEFAAAML_52 | 0.0 | 1.0 | 0.0 |
| CEFAAAML_53 | 0.0 | 1.0 | 0.0 |
| CEFAAAML_54 | 0.0 | 1.0 | 0.0 |
| CEFAAAML_55 | 0.0 | 1.0 | 0.0 |
| CEFAAAML_56 | 0.0 | 1.0 | 0.0 |
| CEFAAAML_57 | 0.0 | 1.0 | 0.0 |
| CEFAAAML_58 | 0.0 | 1.0 | 0.0 |
| CEFAAAML_59 | 0.0 | 1.0 | 0.0 |
| CEFAAAML_60 | 0.0 | 1.0 | 0.0 |
| CEFAAAML_61 | 0.0 | 1.0 | 0.0 |
| CEFAAAML_62 | 0.0 | 1.0 | 0.0 |
| CEFAAAML_63 | 0.0 | 1.0 | 0.0 |
| CEFAAAML_64 | 0.0 | 1.0 | 0.0 |
| CEFAAAML_65 | 0.0 | 1.0 | 0.0 |
| CEFAAAML_66 | 0.0 | 1.0 | 0.0 |
| CEFAAAML_67 | 0.0 | 1.0 | 0.0 |
| CEFAAAML_68 | 0.0 | 1.0 | 0.0 |
| CEFAAAML_69 | 0.0 | 1.0 | 0.0 |
| CEFAAAML_70 | 0.0 | 1.0 | 0.0 |
| CEFAAAML_71 | 0.0 | 1.0 | 0.0 |
| CEFAAAML_72 | 0.0 | 1.0 | 0.0 |
| CEFAAAML_73 | 0.0 | 1.0 | 0.0 |
| CEFAAAML_74 | 0.0 | 1.0 | 0.0 |
| CEFAAAML_75 | 1.0 | 0.0 | 1.0 |
| CEFAAAML_77 | 1.0 | 0.0 | 1.0 |
| CEFAAAML_78 | 1.0 | 0.0 | 1.0 |
| CEFAAAML_79 | 0.0 | 1.0 | 0.0 |
| CEFAAAML_80 | 1.0 | 0.0 | 1.0 |
| CEFAAAML_85 | 0.0 | 1.0 | 0.0 |
| CEFAAAML_96 | 0.0 | 1.0 | 0.0 |
| CEFAAAML_107 | 0.0 | 1.0 | 0.0 |
| CEFAAAML_118 | 0.0 | 1.0 | 0.0 |
| CEFAAAML_129 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| CEFAAAML_55 | 6407 | 14121 | False | Unknown | VOG7642, VOG7641, VOG0585, VOG0275, VOG4910 |
Phigaro v2.4.0 (Database: Jan. 2024 release)