Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 2 | 0 | 0 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| CPIKPKEF_13 | 78088 | 78990 | cepA | ARO:3003559 | cepA | 100.00 | 100.00 | U05883.1 |
| CPIKPKEF_182 | 1481 | 3226 | tet(Q) | ARO:3000191 | tet(Q) | 100.00 | 88.58 | Z21523.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| CPIKPKEF_13 | 78088 | 78990 | cepA | Unknown Beta-lactam | 100.00 | 100.00 | L13472 |
| CPIKPKEF_182 | 1529 | 3226 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 100.00 | 88.16 | Z21523 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| CPIKPKEF_13 | 78088 | 78987 | cepA | CepA family extended-spectrum class A beta-lactamase | EXACTX | 100.00 | 100.00 | WP_005795628.1 |
| CPIKPKEF_182 | 1529 | 3226 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | PARTIAL_CONTIG_ENDX | 100.00 | 88.30 | WP_002560998.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| CPIKPKEF_1 | 0.0 | 1.0 | 0.0 |
| CPIKPKEF_2 | 0.0 | 1.0 | 0.0 |
| CPIKPKEF_13 | 0.0 | 1.0 | 0.0 |
| CPIKPKEF_24 | 0.0 | 1.0 | 0.0 |
| CPIKPKEF_35 | 0.0 | 1.0 | 0.0 |
| CPIKPKEF_46 | 0.0 | 1.0 | 0.0 |
| CPIKPKEF_57 | 0.0 | 1.0 | 0.0 |
| CPIKPKEF_68 | 0.0 | 1.0 | 0.0 |
| CPIKPKEF_79 | 0.0 | 1.0 | 0.0 |
| CPIKPKEF_90 | 0.0 | 1.0 | 0.0 |
| CPIKPKEF_101 | 0.0 | 1.0 | 0.0 |
| CPIKPKEF_112 | 0.0 | 1.0 | 0.0 |
| CPIKPKEF_113 | 0.0 | 1.0 | 0.0 |
| CPIKPKEF_124 | 0.0 | 1.0 | 0.0 |
| CPIKPKEF_135 | 0.0 | 1.0 | 0.0 |
| CPIKPKEF_146 | 0.0 | 1.0 | 0.0 |
| CPIKPKEF_157 | 0.0 | 1.0 | 0.0 |
| CPIKPKEF_162 | 0.0 | 1.0 | 0.0 |
| CPIKPKEF_163 | 0.0 | 1.0 | 0.0 |
| CPIKPKEF_164 | 0.0 | 1.0 | 0.0 |
| CPIKPKEF_165 | 0.0 | 1.0 | 0.0 |
| CPIKPKEF_166 | 0.0 | 1.0 | 0.0 |
| CPIKPKEF_167 | 0.0 | 1.0 | 0.0 |
| CPIKPKEF_168 | 0.0 | 1.0 | 0.0 |
| CPIKPKEF_169 | 0.0 | 1.0 | 0.0 |
| CPIKPKEF_170 | 0.0 | 1.0 | 0.0 |
| CPIKPKEF_171 | 0.0 | 1.0 | 0.0 |
| CPIKPKEF_172 | 0.0 | 1.0 | 0.0 |
| CPIKPKEF_173 | 0.0 | 1.0 | 0.0 |
| CPIKPKEF_174 | 0.0 | 1.0 | 0.0 |
| CPIKPKEF_175 | 0.0 | 1.0 | 0.0 |
| CPIKPKEF_176 | 0.0 | 1.0 | 0.0 |
| CPIKPKEF_177 | 1.0 | 0.0 | 1.0 |
| CPIKPKEF_178 | 0.0 | 1.0 | 0.0 |
| CPIKPKEF_179 | 0.0 | 1.0 | 0.0 |
| CPIKPKEF_180 | 1.0 | 0.0 | 1.0 |
| CPIKPKEF_181 | 1.0 | 0.0 | 1.0 |
| CPIKPKEF_182 | 1.0 | 0.0 | 1.0 |
| CPIKPKEF_184 | 1.0 | 0.0 | 1.0 |
| CPIKPKEF_185 | 1.0 | 0.0 | 1.0 |
| CPIKPKEF_186 | 0.0 | 1.0 | 0.0 |
| CPIKPKEF_188 | 0.0 | 1.0 | 0.0 |
| CPIKPKEF_189 | 1.0 | 0.0 | 1.0 |
| CPIKPKEF_190 | 1.0 | 0.0 | 1.0 |
| CPIKPKEF_199 | 0.0 | 1.0 | 0.0 |
| CPIKPKEF_210 | 0.0 | 1.0 | 0.0 |
| CPIKPKEF_221 | 0.0 | 1.0 | 0.0 |
| CPIKPKEF_232 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| No hit found | |||||
Phigaro v2.4.0 (Database: Jan. 2024 release)