Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| PJBDBCPK_10 | 42324 | 43028 | WalR | 5.39e-113 | transcriptional regulatory protein | 83.40 | 100.00 | EPH95667 |
| PJBDBCPK_16 | 18128 | 18325 | CspR | 6.78e-34 | cold shock protein | 89.39 | 100.00 | AAO82613 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| PJBDBCPK_1 | 0.0 | 1.0 | 0.0 |
| PJBDBCPK_2 | 0.0 | 1.0 | 0.0 |
| PJBDBCPK_3 | 0.0 | 1.0 | 0.0 |
| PJBDBCPK_4 | 0.0 | 1.0 | 0.0 |
| PJBDBCPK_5 | 0.0 | 1.0 | 0.0 |
| PJBDBCPK_6 | 0.0 | 1.0 | 0.0 |
| PJBDBCPK_7 | 0.0 | 1.0 | 0.0 |
| PJBDBCPK_8 | 0.0 | 1.0 | 0.0 |
| PJBDBCPK_9 | 0.0 | 1.0 | 0.0 |
| PJBDBCPK_10 | 0.0 | 1.0 | 0.0 |
| PJBDBCPK_11 | 0.0 | 1.0 | 0.0 |
| PJBDBCPK_12 | 0.0 | 1.0 | 0.0 |
| PJBDBCPK_13 | 0.0 | 1.0 | 0.0 |
| PJBDBCPK_14 | 0.0 | 1.0 | 0.0 |
| PJBDBCPK_15 | 0.0 | 1.0 | 0.0 |
| PJBDBCPK_16 | 0.0 | 1.0 | 0.0 |
| PJBDBCPK_17 | 0.0 | 1.0 | 0.0 |
| PJBDBCPK_18 | 0.0 | 1.0 | 0.0 |
| PJBDBCPK_19 | 0.0 | 1.0 | 0.0 |
| PJBDBCPK_20 | 0.0 | 1.0 | 0.0 |
| PJBDBCPK_21 | 0.0 | 1.0 | 0.0 |
| PJBDBCPK_22 | 0.0 | 1.0 | 0.0 |
| PJBDBCPK_23 | 0.0 | 1.0 | 0.0 |
| PJBDBCPK_24 | 1.0 | 0.0 | 1.0 |
| PJBDBCPK_25 | 0.0 | 1.0 | 0.0 |
| PJBDBCPK_26 | 0.0 | 1.0 | 0.0 |
| PJBDBCPK_27 | 1.0 | 0.0 | 1.0 |
| PJBDBCPK_28 | 0.0 | 1.0 | 0.0 |
| PJBDBCPK_29 | 0.0 | 1.0 | 0.0 |
| PJBDBCPK_30 | 0.0 | 1.0 | 0.0 |
| PJBDBCPK_31 | 0.0 | 1.0 | 0.0 |
| PJBDBCPK_32 | 0.0 | 1.0 | 0.0 |
| PJBDBCPK_33 | 1.0 | 0.0 | 1.0 |
| PJBDBCPK_34 | 0.0 | 1.0 | 0.0 |
| PJBDBCPK_35 | 0.0 | 1.0 | 0.0 |
| PJBDBCPK_36 | 0.0 | 1.0 | 0.0 |
| PJBDBCPK_37 | 0.0 | 1.0 | 0.0 |
| PJBDBCPK_38 | 0.0 | 1.0 | 0.0 |
| PJBDBCPK_39 | 0.0 | 1.0 | 0.0 |
| PJBDBCPK_40 | 1.0 | 0.0 | 1.0 |
| PJBDBCPK_41 | 0.0 | 1.0 | 0.0 |
| PJBDBCPK_42 | 1.0 | 0.0 | 1.0 |
| PJBDBCPK_43 | 1.0 | 0.0 | 1.0 |
| PJBDBCPK_44 | 1.0 | 0.0 | 1.0 |
| PJBDBCPK_45 | 0.0 | 1.0 | 0.0 |
| PJBDBCPK_46 | 1.0 | 0.0 | 1.0 |
| PJBDBCPK_47 | 0.0 | 1.0 | 0.0 |
| PJBDBCPK_48 | 1.0 | 0.0 | 1.0 |
| PJBDBCPK_49 | 1.0 | 0.0 | 1.0 |
| PJBDBCPK_50 | 1.0 | 0.0 | 1.0 |
| PJBDBCPK_51 | 1.0 | 0.0 | 1.0 |
| PJBDBCPK_52 | 0.0 | 1.0 | 0.0 |
| PJBDBCPK_53 | 1.0 | 0.0 | 1.0 |
| PJBDBCPK_54 | 1.0 | 0.0 | 1.0 |
| PJBDBCPK_55 | 0.0 | 1.0 | 0.0 |
| PJBDBCPK_56 | 1.0 | 0.0 | 1.0 |
| PJBDBCPK_58 | 0.0 | 1.0 | 0.0 |
| PJBDBCPK_59 | 1.0 | 0.0 | 1.0 |
| PJBDBCPK_60 | 0.0 | 1.0 | 0.0 |
| PJBDBCPK_61 | 1.0 | 0.0 | 1.0 |
| PJBDBCPK_62 | 1.0 | 0.0 | 1.0 |
| PJBDBCPK_63 | 0.0 | 1.0 | 0.0 |
| PJBDBCPK_64 | 1.0 | 0.0 | 1.0 |
| PJBDBCPK_65 | 0.0 | 1.0 | 0.0 |
| PJBDBCPK_66 | 0.0 | 1.0 | 0.0 |
| PJBDBCPK_67 | 0.0 | 1.0 | 0.0 |
| PJBDBCPK_68 | 1.0 | 0.0 | 1.0 |
| PJBDBCPK_69 | 1.0 | 0.0 | 1.0 |
| PJBDBCPK_70 | 1.0 | 0.0 | 1.0 |
| PJBDBCPK_71 | 0.0 | 1.0 | 0.0 |
| PJBDBCPK_72 | 1.0 | 0.0 | 1.0 |
| PJBDBCPK_73 | 1.0 | 0.0 | 1.0 |
| PJBDBCPK_74 | 1.0 | 0.0 | 1.0 |
| PJBDBCPK_75 | 1.0 | 0.0 | 1.0 |
| PJBDBCPK_77 | 0.0 | 1.0 | 0.0 |
| PJBDBCPK_78 | 1.0 | 0.0 | 1.0 |
| PJBDBCPK_88 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| PJBDBCPK_4 | 40226 | 50873 | False | Siphoviridae | VOG1581, VOG4632, VOG4606, VOG0205, VOG4841, VOG4581, VOG4544, VOG5051, VOG4556, VOG4568, VOG0204 |
| PJBDBCPK_16 | 38661 | 45221 | False | Siphoviridae | VOG8241, VOG1309, VOG0186, VOG4566, VOG6238, VOG1638, VOG8987, VOG11003, VOG9860, VOG0536, VOG9741 |
| PJBDBCPK_27 | 2 | 17520 | False | Siphoviridae | VOG4605, VOG6163, VOG2225, VOG4586, VOG0704, VOG0539, VOG4589, VOG0204, VOG5601, VOG4553, VOG4568, VOG4556, VOG3644, VOG4544, VOG4581, VOG4841, VOG1345, VOG6947 |
| PJBDBCPK_88 | 103407 | 107886 | False | Myoviridae / Siphoviridae | VOG4605, VOG4918, VOG0703, VOG6540, VOG9955 |
Phigaro v2.4.0 (Database: Jan. 2024 release)