Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| GKKKCIGJ_9 | 29715 | 29011 | WalR | 7.84e-116 | transcriptional regulatory protein | 84.25 | 100.00 | EPH95667 |
| GKKKCIGJ_47 | 226 | 420 | CspR | 3.91e-30 | cold shock protein | 84.61 | 98.48 | AAO82613 |
| GKKKCIGJ_47 | 226 | 423 | CspA | 6.00e-30 | cold shock protein | 84.85 | 100.00 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| GKKKCIGJ_1 | 1.0 | 0.0 | 1.0 |
| GKKKCIGJ_2 | 0.0 | 1.0 | 0.0 |
| GKKKCIGJ_3 | 0.0 | 1.0 | 0.0 |
| GKKKCIGJ_4 | 0.0 | 1.0 | 0.0 |
| GKKKCIGJ_5 | 0.0 | 1.0 | 0.0 |
| GKKKCIGJ_6 | 0.0 | 1.0 | 0.0 |
| GKKKCIGJ_7 | 0.0 | 1.0 | 0.0 |
| GKKKCIGJ_8 | 0.0 | 1.0 | 0.0 |
| GKKKCIGJ_9 | 0.0 | 1.0 | 0.0 |
| GKKKCIGJ_10 | 0.0 | 1.0 | 0.0 |
| GKKKCIGJ_11 | 0.0 | 1.0 | 0.0 |
| GKKKCIGJ_12 | 1.0 | 0.0 | 1.0 |
| GKKKCIGJ_13 | 0.0 | 1.0 | 0.0 |
| GKKKCIGJ_14 | 1.0 | 0.0 | 1.0 |
| GKKKCIGJ_15 | 0.0 | 1.0 | 0.0 |
| GKKKCIGJ_16 | 0.0 | 1.0 | 0.0 |
| GKKKCIGJ_18 | 0.0 | 1.0 | 0.0 |
| GKKKCIGJ_19 | 0.0 | 1.0 | 0.0 |
| GKKKCIGJ_20 | 1.0 | 0.0 | 1.0 |
| GKKKCIGJ_21 | 0.0 | 1.0 | 0.0 |
| GKKKCIGJ_24 | 1.0 | 0.0 | 1.0 |
| GKKKCIGJ_25 | 0.0 | 1.0 | 0.0 |
| GKKKCIGJ_26 | 0.0 | 1.0 | 0.0 |
| GKKKCIGJ_27 | 0.0 | 1.0 | 0.0 |
| GKKKCIGJ_28 | 0.0 | 1.0 | 0.0 |
| GKKKCIGJ_29 | 0.0 | 1.0 | 0.0 |
| GKKKCIGJ_30 | 0.0 | 1.0 | 0.0 |
| GKKKCIGJ_31 | 0.0 | 1.0 | 0.0 |
| GKKKCIGJ_32 | 0.0 | 1.0 | 0.0 |
| GKKKCIGJ_33 | 0.0 | 1.0 | 0.0 |
| GKKKCIGJ_34 | 0.0 | 1.0 | 0.0 |
| GKKKCIGJ_35 | 1.0 | 0.0 | 1.0 |
| GKKKCIGJ_36 | 1.0 | 0.0 | 1.0 |
| GKKKCIGJ_37 | 0.0 | 1.0 | 0.0 |
| GKKKCIGJ_38 | 0.0 | 1.0 | 0.0 |
| GKKKCIGJ_39 | 0.0 | 1.0 | 0.0 |
| GKKKCIGJ_42 | 1.0 | 0.0 | 1.0 |
| GKKKCIGJ_43 | 0.0 | 1.0 | 0.0 |
| GKKKCIGJ_44 | 0.0 | 1.0 | 0.0 |
| GKKKCIGJ_45 | 0.0 | 1.0 | 0.0 |
| GKKKCIGJ_46 | 0.0 | 1.0 | 0.0 |
| GKKKCIGJ_47 | 0.0 | 1.0 | 0.0 |
| GKKKCIGJ_48 | 0.0 | 1.0 | 0.0 |
| GKKKCIGJ_49 | 1.0 | 0.0 | 1.0 |
| GKKKCIGJ_50 | 1.0 | 0.0 | 1.0 |
| GKKKCIGJ_51 | 0.0 | 1.0 | 0.0 |
| GKKKCIGJ_52 | 0.0 | 1.0 | 0.0 |
| GKKKCIGJ_54 | 0.0 | 1.0 | 0.0 |
| GKKKCIGJ_55 | 0.0 | 1.0 | 0.0 |
| GKKKCIGJ_56 | 0.0 | 1.0 | 0.0 |
| GKKKCIGJ_57 | 1.0 | 0.0 | 1.0 |
| GKKKCIGJ_58 | 1.0 | 0.0 | 1.0 |
| GKKKCIGJ_61 | 0.0 | 1.0 | 0.0 |
| GKKKCIGJ_67 | 0.0 | 1.0 | 0.0 |
| GKKKCIGJ_78 | 0.0 | 1.0 | 0.0 |
| GKKKCIGJ_81 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| GKKKCIGJ_6 | 71398 | 97296 | False | Siphoviridae | VOG0044, VOG3643, VOG4010, VOG0198, VOG4841, VOG4581, VOG1886, VOG0202, VOG4556, VOG4573, VOG4553, VOG0204, VOG0205, VOG0207, VOG4586, VOG0660, VOG4545, VOG4605, VOG4599, VOG10957, VOG8870, VOG0254, VOG9998 |
| GKKKCIGJ_30 | 20538 | 40496 | False | Siphoviridae | VOG0602, VOG9888, VOG8917, VOG9997, VOG3498, VOG4619, VOG0801, VOG6163, VOG0541, VOG4586, VOG0704, VOG0539, VOG4589, VOG0562, VOG4553, VOG4573, VOG4556 |
| GKKKCIGJ_37 | 41347 | 72018 | False | Siphoviridae | VOG4687, VOG4602, VOG6495, VOG0186, VOG4566, VOG4693, VOG0198, VOG3015, VOG1183, VOG0796, VOG0691, VOG0692, VOG9317, VOG4711, VOG0695, VOG0696, VOG0697, VOG6548, VOG9763, VOG0701, VOG0801, VOG4619, VOG9657 |
Phigaro v2.4.0 (Database: Jan. 2024 release)