Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| PMLJLBGN_67 | 55376 | 56080 | WalR | 4.69e-115 | transcriptional regulatory protein | 84.25 | 100.00 | EPH95667 |
| PMLJLBGN_30 | 227 | 421 | CspR | 3.94e-30 | cold shock protein | 84.61 | 98.48 | AAO82613 |
| PMLJLBGN_30 | 227 | 424 | CspA | 6.04e-30 | cold shock protein | 84.85 | 100.00 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| PMLJLBGN_1 | 0.0 | 1.0 | 0.0 |
| PMLJLBGN_2 | 0.0 | 1.0 | 0.0 |
| PMLJLBGN_3 | 0.0 | 1.0 | 0.0 |
| PMLJLBGN_4 | 0.0 | 1.0 | 0.0 |
| PMLJLBGN_5 | 1.0 | 0.0 | 1.0 |
| PMLJLBGN_6 | 0.0 | 1.0 | 0.0 |
| PMLJLBGN_7 | 0.0 | 1.0 | 0.0 |
| PMLJLBGN_8 | 0.0 | 1.0 | 0.0 |
| PMLJLBGN_9 | 0.0 | 1.0 | 0.0 |
| PMLJLBGN_10 | 0.0 | 1.0 | 0.0 |
| PMLJLBGN_11 | 0.0 | 1.0 | 0.0 |
| PMLJLBGN_12 | 0.0 | 1.0 | 0.0 |
| PMLJLBGN_13 | 0.0 | 1.0 | 0.0 |
| PMLJLBGN_14 | 0.0 | 1.0 | 0.0 |
| PMLJLBGN_15 | 0.0 | 1.0 | 0.0 |
| PMLJLBGN_16 | 0.0 | 1.0 | 0.0 |
| PMLJLBGN_17 | 0.0 | 1.0 | 0.0 |
| PMLJLBGN_18 | 1.0 | 0.0 | 1.0 |
| PMLJLBGN_19 | 0.0 | 1.0 | 0.0 |
| PMLJLBGN_20 | 0.0 | 1.0 | 0.0 |
| PMLJLBGN_21 | 0.0 | 1.0 | 0.0 |
| PMLJLBGN_22 | 0.0 | 1.0 | 0.0 |
| PMLJLBGN_23 | 0.0 | 1.0 | 0.0 |
| PMLJLBGN_24 | 1.0 | 0.0 | 1.0 |
| PMLJLBGN_25 | 0.0 | 1.0 | 0.0 |
| PMLJLBGN_26 | 0.0 | 1.0 | 0.0 |
| PMLJLBGN_27 | 0.0 | 1.0 | 0.0 |
| PMLJLBGN_28 | 1.0 | 0.0 | 1.0 |
| PMLJLBGN_29 | 1.0 | 0.0 | 1.0 |
| PMLJLBGN_30 | 0.0 | 1.0 | 0.0 |
| PMLJLBGN_31 | 0.0 | 1.0 | 0.0 |
| PMLJLBGN_32 | 0.0 | 1.0 | 0.0 |
| PMLJLBGN_34 | 0.0 | 1.0 | 0.0 |
| PMLJLBGN_35 | 1.0 | 0.0 | 1.0 |
| PMLJLBGN_36 | 1.0 | 0.0 | 1.0 |
| PMLJLBGN_38 | 0.0 | 1.0 | 0.0 |
| PMLJLBGN_39 | 0.0 | 1.0 | 0.0 |
| PMLJLBGN_40 | 0.0 | 1.0 | 0.0 |
| PMLJLBGN_41 | 1.0 | 0.0 | 1.0 |
| PMLJLBGN_42 | 0.0 | 1.0 | 0.0 |
| PMLJLBGN_43 | 0.0 | 1.0 | 0.0 |
| PMLJLBGN_44 | 0.0 | 1.0 | 0.0 |
| PMLJLBGN_45 | 0.0 | 1.0 | 0.0 |
| PMLJLBGN_46 | 0.0 | 1.0 | 0.0 |
| PMLJLBGN_47 | 0.0 | 1.0 | 0.0 |
| PMLJLBGN_51 | 0.0 | 1.0 | 0.0 |
| PMLJLBGN_52 | 0.0 | 1.0 | 0.0 |
| PMLJLBGN_54 | 1.0 | 0.0 | 1.0 |
| PMLJLBGN_55 | 1.0 | 0.0 | 1.0 |
| PMLJLBGN_56 | 0.0 | 1.0 | 0.0 |
| PMLJLBGN_58 | 1.0 | 0.0 | 1.0 |
| PMLJLBGN_67 | 0.0 | 1.0 | 0.0 |
| PMLJLBGN_68 | 0.0 | 1.0 | 0.0 |
| PMLJLBGN_69 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| PMLJLBGN_6 | 20543 | 40501 | False | Siphoviridae | VOG0602, VOG9888, VOG8917, VOG9997, VOG3498, VOG4619, VOG0801, VOG6163, VOG0541, VOG4586, VOG0704, VOG0539, VOG4589, VOG0562, VOG4553, VOG4573, VOG4556 |
| PMLJLBGN_23 | 41115 | 72191 | False | Siphoviridae | VOG4687, VOG4602, VOG6495, VOG0186, VOG4566, VOG4693, VOG0198, VOG3015, VOG1183, VOG0796, VOG0691, VOG0692, VOG9317, VOG4711, VOG0695, VOG0696, VOG0697, VOG6548, VOG9763, VOG0701, VOG0801, VOG4619, VOG9657, VOG8438 |
| PMLJLBGN_45 | 117379 | 143277 | False | Siphoviridae | VOG9998, VOG0254, VOG8870, VOG10957, VOG4599, VOG4605, VOG4545, VOG0660, VOG4586, VOG0207, VOG0205, VOG0204, VOG4553, VOG4573, VOG4556, VOG0202, VOG1886, VOG4581, VOG4841, VOG0198, VOG4010, VOG3643, VOG0044 |
Phigaro v2.4.0 (Database: Jan. 2024 release)