Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| NMBONLBB_60 | 55359 | 56063 | WalR | 4.69e-115 | transcriptional regulatory protein | 84.25 | 100.00 | EPH95667 |
| NMBONLBB_36 | 179 | 3 | CspR | 3.22e-32 | cold shock protein | 84.75 | 89.39 | AAO82613 |
| NMBONLBB_36 | 179 | 3 | CspA | 7.81e-32 | cold shock protein | 86.44 | 89.39 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| NMBONLBB_1 | 1223 | 2152 | rep28 | 930 / 930 | 98.82 | CP003162 |
| NMBONLBB_6 | 1467 | 2567 | repUS73 | 1101 / 1101 | 95.10 | CP002654 |
| NMBONLBB_100 | 8593 | 9221 | rep38 | 630 / 903 | 87.94 | CP005943 |
| NMBONLBB_2 | 139 | 637 | repUS54 | 500 / 690 | 84.80 | EU185047 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| NMBONLBB_1 | 1.0 | 0.0 | 1.0 |
| NMBONLBB_2 | 1.0 | 0.0 | 1.0 |
| NMBONLBB_3 | 1.0 | 0.0 | 1.0 |
| NMBONLBB_6 | 1.0 | 0.0 | 1.0 |
| NMBONLBB_8 | 0.0 | 1.0 | 0.0 |
| NMBONLBB_9 | 0.0 | 1.0 | 0.0 |
| NMBONLBB_10 | 1.0 | 0.0 | 1.0 |
| NMBONLBB_12 | 1.0 | 0.0 | 1.0 |
| NMBONLBB_13 | 0.0 | 1.0 | 0.0 |
| NMBONLBB_14 | 0.0 | 1.0 | 0.0 |
| NMBONLBB_16 | 1.0 | 0.0 | 1.0 |
| NMBONLBB_17 | 1.0 | 0.0 | 1.0 |
| NMBONLBB_19 | 1.0 | 0.0 | 1.0 |
| NMBONLBB_21 | 1.0 | 0.0 | 1.0 |
| NMBONLBB_24 | 0.0 | 1.0 | 0.0 |
| NMBONLBB_26 | 1.0 | 0.0 | 1.0 |
| NMBONLBB_31 | 0.0 | 1.0 | 0.0 |
| NMBONLBB_32 | 1.0 | 0.0 | 1.0 |
| NMBONLBB_35 | 0.0 | 1.0 | 0.0 |
| NMBONLBB_37 | 1.0 | 0.0 | 1.0 |
| NMBONLBB_39 | 1.0 | 0.0 | 1.0 |
| NMBONLBB_45 | 0.0 | 1.0 | 0.0 |
| NMBONLBB_56 | 0.0 | 1.0 | 0.0 |
| NMBONLBB_58 | 1.0 | 0.0 | 1.0 |
| NMBONLBB_59 | 1.0 | 0.0 | 1.0 |
| NMBONLBB_60 | 0.0 | 1.0 | 0.0 |
| NMBONLBB_61 | 0.0 | 1.0 | 0.0 |
| NMBONLBB_62 | 1.0 | 0.0 | 1.0 |
| NMBONLBB_63 | 0.0 | 1.0 | 0.0 |
| NMBONLBB_64 | 0.0 | 1.0 | 0.0 |
| NMBONLBB_66 | 0.0 | 1.0 | 0.0 |
| NMBONLBB_67 | 0.0 | 1.0 | 0.0 |
| NMBONLBB_68 | 1.0 | 0.0 | 1.0 |
| NMBONLBB_69 | 1.0 | 0.0 | 1.0 |
| NMBONLBB_70 | 1.0 | 0.0 | 1.0 |
| NMBONLBB_71 | 0.0 | 1.0 | 0.0 |
| NMBONLBB_72 | 1.0 | 0.0 | 1.0 |
| NMBONLBB_73 | 1.0 | 0.0 | 1.0 |
| NMBONLBB_75 | 0.0 | 1.0 | 0.0 |
| NMBONLBB_76 | 0.0 | 1.0 | 0.0 |
| NMBONLBB_77 | 0.0 | 1.0 | 0.0 |
| NMBONLBB_78 | 0.0 | 1.0 | 0.0 |
| NMBONLBB_79 | 0.0 | 1.0 | 0.0 |
| NMBONLBB_80 | 0.0 | 1.0 | 0.0 |
| NMBONLBB_81 | 0.0 | 1.0 | 0.0 |
| NMBONLBB_83 | 0.0 | 1.0 | 0.0 |
| NMBONLBB_84 | 0.0 | 1.0 | 0.0 |
| NMBONLBB_85 | 0.0 | 1.0 | 0.0 |
| NMBONLBB_86 | 0.0 | 1.0 | 0.0 |
| NMBONLBB_87 | 0.0 | 1.0 | 0.0 |
| NMBONLBB_88 | 0.0 | 1.0 | 0.0 |
| NMBONLBB_89 | 0.0 | 1.0 | 0.0 |
| NMBONLBB_90 | 0.0 | 1.0 | 0.0 |
| NMBONLBB_91 | 0.0 | 1.0 | 0.0 |
| NMBONLBB_92 | 0.0 | 1.0 | 0.0 |
| NMBONLBB_93 | 1.0 | 0.0 | 1.0 |
| NMBONLBB_95 | 0.0 | 1.0 | 0.0 |
| NMBONLBB_96 | 0.0 | 1.0 | 0.0 |
| NMBONLBB_97 | 0.0 | 1.0 | 0.0 |
| NMBONLBB_98 | 1.0 | 0.0 | 1.0 |
| NMBONLBB_99 | 0.0 | 1.0 | 0.0 |
| NMBONLBB_100 | 1.0 | 0.0 | 1.0 |
| NMBONLBB_101 | 0.0 | 1.0 | 0.0 |
| NMBONLBB_102 | 0.0 | 1.0 | 0.0 |
| NMBONLBB_103 | 1.0 | 0.0 | 1.0 |
| NMBONLBB_104 | 1.0 | 0.0 | 1.0 |
| NMBONLBB_105 | 0.0 | 1.0 | 0.0 |
| NMBONLBB_106 | 0.0 | 1.0 | 0.0 |
| NMBONLBB_107 | 0.0 | 1.0 | 0.0 |
| NMBONLBB_108 | 0.0 | 1.0 | 0.0 |
| NMBONLBB_109 | 0.0 | 1.0 | 0.0 |
| NMBONLBB_110 | 1.0 | 0.0 | 1.0 |
| NMBONLBB_112 | 0.0 | 1.0 | 0.0 |
| NMBONLBB_113 | 0.0 | 1.0 | 0.0 |
| NMBONLBB_114 | 1.0 | 0.0 | 1.0 |
| NMBONLBB_115 | 1.0 | 0.0 | 1.0 |
| NMBONLBB_116 | 0.0 | 1.0 | 0.0 |
| NMBONLBB_117 | 0.0 | 1.0 | 0.0 |
| NMBONLBB_118 | 0.0 | 1.0 | 0.0 |
| NMBONLBB_119 | 0.0 | 1.0 | 0.0 |
| NMBONLBB_120 | 0.0 | 1.0 | 0.0 |
| NMBONLBB_121 | 0.0 | 1.0 | 0.0 |
| NMBONLBB_122 | 0.0 | 1.0 | 0.0 |
| NMBONLBB_123 | 1.0 | 0.0 | 1.0 |
| NMBONLBB_126 | 1.0 | 0.0 | 1.0 |
| NMBONLBB_127 | 0.0 | 1.0 | 0.0 |
| NMBONLBB_128 | 0.0 | 1.0 | 0.0 |
| NMBONLBB_133 | 0.0 | 1.0 | 0.0 |
| NMBONLBB_134 | 0.0 | 1.0 | 0.0 |
| NMBONLBB_135 | 1.0 | 0.0 | 1.0 |
| NMBONLBB_137 | 0.0 | 1.0 | 0.0 |
| NMBONLBB_138 | 0.0 | 1.0 | 0.0 |
| NMBONLBB_139 | 0.0 | 1.0 | 0.0 |
| NMBONLBB_142 | 1.0 | 0.0 | 1.0 |
| NMBONLBB_144 | 1.0 | 0.0 | 1.0 |
| NMBONLBB_146 | 0.0 | 1.0 | 0.0 |
| NMBONLBB_147 | 1.0 | 0.0 | 1.0 |
| NMBONLBB_148 | 1.0 | 0.0 | 1.0 |
| NMBONLBB_149 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| NMBONLBB_24 | 1038 | 30928 | False | Siphoviridae | VOG0602, VOG1637, VOG8917, VOG9997, VOG3498, VOG4763, VOG4619, VOG0801, VOG6163, VOG0541, VOG4586, VOG0704, VOG0539, VOG4589, VOG0562, VOG4553, VOG4573, VOG4556, VOG4844, VOG4673, VOG3643, VOG0586, VOG0327, VOG4609, VOG4632, VOG6545, VOG0322, VOG4548, VOG0321 |
| NMBONLBB_63 | 70908 | 96452 | False | Siphoviridae | VOG3480, VOG10015, VOG0044, VOG3643, VOG4010, VOG0198, VOG4841, VOG4581, VOG1886, VOG0202, VOG4556, VOG4573, VOG4553, VOG0204, VOG0205, VOG0207, VOG4586, VOG0660, VOG4545, VOG4605, VOG4599, VOG10957 |
| NMBONLBB_91 | 33690 | 52811 | False | Siphoviridae | VOG0796, VOG10227, VOG0720, VOG4564, VOG4555, VOG4711, VOG4713, VOG1320, VOG5660, VOG1321, VOG0799, VOG0725, VOG1323, VOG0801, VOG4619, VOG4856, VOG8917 |
| NMBONLBB_113 | 14020 | 32666 | False | Siphoviridae | VOG3699, VOG0691, VOG0692, VOG9317, VOG4711, VOG0695, VOG0696, VOG0697, VOG6548, VOG8357, VOG0701, VOG6163, VOG0801, VOG4619 |
Phigaro v2.4.0 (Database: Jan. 2024 release)