Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| HHJMMLJH_35 | 29715 | 29011 | WalR | 7.85e-116 | transcriptional regulatory protein | 84.25 | 100.00 | EPH95667 |
| HHJMMLJH_15 | 88436 | 88242 | CspR | 3.91e-30 | cold shock protein | 84.61 | 98.48 | AAO82613 |
| HHJMMLJH_15 | 88436 | 88239 | CspA | 6.00e-30 | cold shock protein | 84.85 | 100.00 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| HHJMMLJH_1 | 0.0 | 1.0 | 0.0 |
| HHJMMLJH_2 | 0.0 | 1.0 | 0.0 |
| HHJMMLJH_3 | 0.0 | 1.0 | 0.0 |
| HHJMMLJH_4 | 0.0 | 1.0 | 0.0 |
| HHJMMLJH_5 | 0.0 | 1.0 | 0.0 |
| HHJMMLJH_6 | 0.0 | 1.0 | 0.0 |
| HHJMMLJH_7 | 0.0 | 1.0 | 0.0 |
| HHJMMLJH_8 | 1.0 | 0.0 | 1.0 |
| HHJMMLJH_9 | 0.0 | 1.0 | 0.0 |
| HHJMMLJH_10 | 1.0 | 0.0 | 1.0 |
| HHJMMLJH_11 | 0.0 | 1.0 | 0.0 |
| HHJMMLJH_12 | 0.0 | 1.0 | 0.0 |
| HHJMMLJH_13 | 0.0 | 1.0 | 0.0 |
| HHJMMLJH_14 | 0.0 | 1.0 | 0.0 |
| HHJMMLJH_15 | 0.0 | 1.0 | 0.0 |
| HHJMMLJH_16 | 0.0 | 1.0 | 0.0 |
| HHJMMLJH_17 | 0.0 | 1.0 | 0.0 |
| HHJMMLJH_18 | 0.0 | 1.0 | 0.0 |
| HHJMMLJH_19 | 0.0 | 1.0 | 0.0 |
| HHJMMLJH_20 | 1.0 | 0.0 | 1.0 |
| HHJMMLJH_21 | 0.0 | 1.0 | 0.0 |
| HHJMMLJH_22 | 0.0 | 1.0 | 0.0 |
| HHJMMLJH_23 | 0.0 | 1.0 | 0.0 |
| HHJMMLJH_24 | 0.0 | 1.0 | 0.0 |
| HHJMMLJH_25 | 0.0 | 1.0 | 0.0 |
| HHJMMLJH_26 | 1.0 | 0.0 | 1.0 |
| HHJMMLJH_27 | 0.0 | 1.0 | 0.0 |
| HHJMMLJH_28 | 0.0 | 1.0 | 0.0 |
| HHJMMLJH_29 | 0.0 | 1.0 | 0.0 |
| HHJMMLJH_31 | 0.0 | 1.0 | 0.0 |
| HHJMMLJH_32 | 1.0 | 0.0 | 1.0 |
| HHJMMLJH_34 | 0.0 | 1.0 | 0.0 |
| HHJMMLJH_35 | 0.0 | 1.0 | 0.0 |
| HHJMMLJH_37 | 1.0 | 0.0 | 1.0 |
| HHJMMLJH_38 | 1.0 | 0.0 | 1.0 |
| HHJMMLJH_39 | 1.0 | 0.0 | 1.0 |
| HHJMMLJH_40 | 0.0 | 1.0 | 0.0 |
| HHJMMLJH_41 | 0.0 | 1.0 | 0.0 |
| HHJMMLJH_42 | 0.0 | 1.0 | 0.0 |
| HHJMMLJH_43 | 0.0 | 1.0 | 0.0 |
| HHJMMLJH_44 | 0.0 | 1.0 | 0.0 |
| HHJMMLJH_45 | 0.0 | 1.0 | 0.0 |
| HHJMMLJH_46 | 1.0 | 0.0 | 1.0 |
| HHJMMLJH_47 | 0.0 | 1.0 | 0.0 |
| HHJMMLJH_48 | 0.0 | 1.0 | 0.0 |
| HHJMMLJH_49 | 0.0 | 1.0 | 0.0 |
| HHJMMLJH_50 | 0.0 | 1.0 | 0.0 |
| HHJMMLJH_51 | 0.0 | 1.0 | 0.0 |
| HHJMMLJH_53 | 0.0 | 1.0 | 0.0 |
| HHJMMLJH_54 | 0.0 | 1.0 | 0.0 |
| HHJMMLJH_55 | 1.0 | 0.0 | 1.0 |
| HHJMMLJH_56 | 0.0 | 1.0 | 0.0 |
| HHJMMLJH_58 | 0.0 | 1.0 | 0.0 |
| HHJMMLJH_59 | 0.0 | 1.0 | 0.0 |
| HHJMMLJH_60 | 0.0 | 1.0 | 0.0 |
| HHJMMLJH_61 | 1.0 | 0.0 | 1.0 |
| HHJMMLJH_62 | 0.0 | 1.0 | 0.0 |
| HHJMMLJH_67 | 0.0 | 1.0 | 0.0 |
| HHJMMLJH_68 | 0.0 | 1.0 | 0.0 |
| HHJMMLJH_69 | 0.0 | 1.0 | 0.0 |
| HHJMMLJH_70 | 0.0 | 1.0 | 0.0 |
| HHJMMLJH_74 | 1.0 | 0.0 | 1.0 |
| HHJMMLJH_75 | 0.0 | 1.0 | 0.0 |
| HHJMMLJH_77 | 0.0 | 1.0 | 0.0 |
| HHJMMLJH_78 | 0.0 | 1.0 | 0.0 |
| HHJMMLJH_80 | 0.0 | 1.0 | 0.0 |
| HHJMMLJH_81 | 0.0 | 1.0 | 0.0 |
| HHJMMLJH_88 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| HHJMMLJH_7 | 133572 | 159470 | False | Siphoviridae | VOG0044, VOG3643, VOG4010, VOG0198, VOG4841, VOG4581, VOG1886, VOG0202, VOG4556, VOG4573, VOG4553, VOG0204, VOG0205, VOG0207, VOG4586, VOG0660, VOG4545, VOG4605, VOG4599, VOG10957, VOG8870, VOG0254, VOG9998 |
| HHJMMLJH_16 | 18793 | 38751 | False | Siphoviridae | VOG4844, VOG4556, VOG4573, VOG4553, VOG0562, VOG4589, VOG0539, VOG0704, VOG4586, VOG0541, VOG6163, VOG0801, VOG4619, VOG3498, VOG9997, VOG8917, VOG9888 |
| HHJMMLJH_56 | 3591 | 34262 | False | Siphoviridae | VOG8438, VOG9657, VOG4619, VOG0801, VOG0701, VOG9763, VOG6548, VOG0697, VOG0696, VOG0695, VOG4711, VOG9317, VOG0692, VOG0691, VOG0796, VOG1183, VOG3015, VOG0198, VOG4693, VOG4566, VOG0186, VOG6495, VOG4602 |
Phigaro v2.4.0 (Database: Jan. 2024 release)