Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| JLIEBPCP_9 | 5146 | 5850 | WalR | 1.91e-115 | transcriptional regulatory protein | 84.25 | 100.00 | EPH95667 |
| JLIEBPCP_156 | 54549 | 54743 | CspR | 7.03e-30 | cold shock protein | 84.61 | 98.48 | AAO82613 |
| JLIEBPCP_156 | 54549 | 54746 | CspA | 9.50e-30 | cold shock protein | 84.85 | 100.00 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| JLIEBPCP_155 | 2458 | 3393 | rep28 | 937 / 936 | 96.48 | CP005948 |
| JLIEBPCP_2 | 20550 | 21579 | rep38 | 1039 / 1104 | 82.48 | CP002655 |
| JLIEBPCP_135 | 4259 | 5221 | repUS73 | 978 / 1101 | 82.00 | CP002654 |
| JLIEBPCP_176 | 157 | 1112 | repUS64 | 960 / 954 | 81.25 | JN601038 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| JLIEBPCP_1 | 0.0 | 1.0 | 0.0 |
| JLIEBPCP_2 | 1.0 | 0.0 | 1.0 |
| JLIEBPCP_4 | 1.0 | 0.0 | 1.0 |
| JLIEBPCP_5 | 0.0 | 1.0 | 0.0 |
| JLIEBPCP_6 | 0.0 | 1.0 | 0.0 |
| JLIEBPCP_7 | 1.0 | 0.0 | 1.0 |
| JLIEBPCP_8 | 0.0 | 1.0 | 0.0 |
| JLIEBPCP_9 | 0.0 | 1.0 | 0.0 |
| JLIEBPCP_10 | 1.0 | 0.0 | 1.0 |
| JLIEBPCP_11 | 0.0 | 1.0 | 0.0 |
| JLIEBPCP_12 | 0.0 | 1.0 | 0.0 |
| JLIEBPCP_13 | 1.0 | 0.0 | 1.0 |
| JLIEBPCP_14 | 1.0 | 0.0 | 1.0 |
| JLIEBPCP_15 | 0.0 | 1.0 | 0.0 |
| JLIEBPCP_16 | 1.0 | 0.0 | 1.0 |
| JLIEBPCP_20 | 1.0 | 0.0 | 1.0 |
| JLIEBPCP_22 | 1.0 | 0.0 | 1.0 |
| JLIEBPCP_24 | 1.0 | 0.0 | 1.0 |
| JLIEBPCP_26 | 0.0 | 1.0 | 0.0 |
| JLIEBPCP_31 | 0.0 | 1.0 | 0.0 |
| JLIEBPCP_35 | 1.0 | 0.0 | 1.0 |
| JLIEBPCP_36 | 0.0 | 1.0 | 0.0 |
| JLIEBPCP_39 | 1.0 | 0.0 | 1.0 |
| JLIEBPCP_40 | 1.0 | 0.0 | 1.0 |
| JLIEBPCP_42 | 0.0 | 1.0 | 0.0 |
| JLIEBPCP_46 | 0.0 | 1.0 | 0.0 |
| JLIEBPCP_49 | 1.0 | 0.0 | 1.0 |
| JLIEBPCP_50 | 1.0 | 0.0 | 1.0 |
| JLIEBPCP_53 | 1.0 | 0.0 | 1.0 |
| JLIEBPCP_56 | 0.0 | 1.0 | 0.0 |
| JLIEBPCP_57 | 1.0 | 0.0 | 1.0 |
| JLIEBPCP_58 | 0.0 | 1.0 | 0.0 |
| JLIEBPCP_59 | 0.0 | 1.0 | 0.0 |
| JLIEBPCP_62 | 1.0 | 0.0 | 1.0 |
| JLIEBPCP_79 | 0.0 | 1.0 | 0.0 |
| JLIEBPCP_90 | 0.0 | 1.0 | 0.0 |
| JLIEBPCP_101 | 0.0 | 1.0 | 0.0 |
| JLIEBPCP_112 | 1.0 | 0.0 | 1.0 |
| JLIEBPCP_113 | 0.0 | 1.0 | 0.0 |
| JLIEBPCP_123 | 0.0 | 1.0 | 0.0 |
| JLIEBPCP_130 | 0.0 | 1.0 | 0.0 |
| JLIEBPCP_131 | 0.0 | 1.0 | 0.0 |
| JLIEBPCP_132 | 0.0 | 1.0 | 0.0 |
| JLIEBPCP_133 | 0.0 | 1.0 | 0.0 |
| JLIEBPCP_134 | 1.0 | 0.0 | 1.0 |
| JLIEBPCP_135 | 1.0 | 0.0 | 1.0 |
| JLIEBPCP_136 | 0.0 | 1.0 | 0.0 |
| JLIEBPCP_137 | 0.0 | 1.0 | 0.0 |
| JLIEBPCP_138 | 1.0 | 0.0 | 1.0 |
| JLIEBPCP_139 | 1.0 | 0.0 | 1.0 |
| JLIEBPCP_140 | 1.0 | 0.0 | 1.0 |
| JLIEBPCP_143 | 0.0 | 1.0 | 0.0 |
| JLIEBPCP_144 | 1.0 | 0.0 | 1.0 |
| JLIEBPCP_145 | 1.0 | 0.0 | 1.0 |
| JLIEBPCP_146 | 1.0 | 0.0 | 1.0 |
| JLIEBPCP_147 | 1.0 | 0.0 | 1.0 |
| JLIEBPCP_148 | 1.0 | 0.0 | 1.0 |
| JLIEBPCP_149 | 0.0 | 1.0 | 0.0 |
| JLIEBPCP_150 | 0.0 | 1.0 | 0.0 |
| JLIEBPCP_151 | 0.0 | 1.0 | 0.0 |
| JLIEBPCP_153 | 0.0 | 1.0 | 0.0 |
| JLIEBPCP_154 | 0.0 | 1.0 | 0.0 |
| JLIEBPCP_155 | 1.0 | 0.0 | 1.0 |
| JLIEBPCP_156 | 0.0 | 1.0 | 0.0 |
| JLIEBPCP_158 | 0.0 | 1.0 | 0.0 |
| JLIEBPCP_159 | 0.0 | 1.0 | 0.0 |
| JLIEBPCP_160 | 0.0 | 1.0 | 0.0 |
| JLIEBPCP_163 | 1.0 | 0.0 | 1.0 |
| JLIEBPCP_164 | 0.0 | 1.0 | 0.0 |
| JLIEBPCP_165 | 0.0 | 1.0 | 0.0 |
| JLIEBPCP_166 | 0.0 | 1.0 | 0.0 |
| JLIEBPCP_167 | 1.0 | 0.0 | 1.0 |
| JLIEBPCP_169 | 0.0 | 1.0 | 0.0 |
| JLIEBPCP_170 | 1.0 | 0.0 | 1.0 |
| JLIEBPCP_171 | 1.0 | 0.0 | 1.0 |
| JLIEBPCP_172 | 1.0 | 0.0 | 1.0 |
| JLIEBPCP_173 | 0.0 | 1.0 | 0.0 |
| JLIEBPCP_174 | 0.0 | 1.0 | 0.0 |
| JLIEBPCP_175 | 0.0 | 1.0 | 0.0 |
| JLIEBPCP_176 | 1.0 | 0.0 | 1.0 |
| JLIEBPCP_177 | 1.0 | 0.0 | 1.0 |
| JLIEBPCP_178 | 0.0 | 1.0 | 0.0 |
| JLIEBPCP_181 | 0.0 | 1.0 | 0.0 |
| JLIEBPCP_182 | 0.0 | 1.0 | 0.0 |
| JLIEBPCP_183 | 0.0 | 1.0 | 0.0 |
| JLIEBPCP_184 | 1.0 | 0.0 | 1.0 |
| JLIEBPCP_185 | 1.0 | 0.0 | 1.0 |
| JLIEBPCP_186 | 0.0 | 1.0 | 0.0 |
| JLIEBPCP_187 | 0.0 | 1.0 | 0.0 |
| JLIEBPCP_189 | 0.0 | 1.0 | 0.0 |
| JLIEBPCP_190 | 0.0 | 1.0 | 0.0 |
| JLIEBPCP_193 | 0.0 | 1.0 | 0.0 |
| JLIEBPCP_194 | 0.0 | 1.0 | 0.0 |
| JLIEBPCP_195 | 0.0 | 1.0 | 0.0 |
| JLIEBPCP_196 | 0.0 | 1.0 | 0.0 |
| JLIEBPCP_197 | 0.0 | 1.0 | 0.0 |
| JLIEBPCP_199 | 0.0 | 1.0 | 0.0 |
| JLIEBPCP_201 | 0.0 | 1.0 | 0.0 |
| JLIEBPCP_202 | 0.0 | 1.0 | 0.0 |
| JLIEBPCP_203 | 1.0 | 0.0 | 1.0 |
| JLIEBPCP_204 | 1.0 | 0.0 | 1.0 |
| JLIEBPCP_205 | 0.0 | 1.0 | 0.0 |
| JLIEBPCP_206 | 1.0 | 0.0 | 1.0 |
| JLIEBPCP_207 | 0.0 | 1.0 | 0.0 |
| JLIEBPCP_208 | 0.0 | 1.0 | 0.0 |
| JLIEBPCP_210 | 1.0 | 0.0 | 1.0 |
| JLIEBPCP_211 | 0.0 | 1.0 | 0.0 |
| JLIEBPCP_212 | 1.0 | 0.0 | 1.0 |
| JLIEBPCP_213 | 1.0 | 0.0 | 1.0 |
| JLIEBPCP_214 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| JLIEBPCP_133 | 139147 | 162899 | False | Siphoviridae | VOG6154, VOG4556, VOG4573, VOG4553, VOG0562, VOG4589, VOG0539, VOG0704, VOG4586, VOG0541, VOG6163, VOG0801, VOG4619, VOG3498, VOG9997, VOG8917, VOG9888, VOG0602, VOG8294, VOG0753 |
| JLIEBPCP_182 | 1107 | 25843 | False | Siphoviridae | VOG8294, VOG4705, VOG0804, VOG9640, VOG8438, VOG1637, VOG3462, VOG0801, VOG4545, VOG0725, VOG0799, VOG0724, VOG9583, VOG4713, VOG1329, VOG4555, VOG4564, VOG0720, VOG10227, VOG0796, VOG9295, VOG6154, VOG7443, VOG0198 |
Phigaro v2.4.0 (Database: Jan. 2024 release)