Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 2 | 0 | 0 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| HCFPAPOD_1 | 319257 | 320057 | ErmF | ARO:3000498 | ErmF | 99.25 | 100.00 | M17124.1 |
| HCFPAPOD_1 | 311678 | 313603 | tet(Q) | ARO:3000191 | tet(Q) | 89.08 | 97.56 | Z21523.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| HCFPAPOD_1 | 319257 | 320057 | erm(F) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.88 | 100.00 | M17808 |
| HCFPAPOD_1 | 311678 | 313603 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 90.45 | 100.00 | L33696 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| HCFPAPOD_1 | 319260 | 320057 | erm(F) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(F) | BLASTX | 99.62 | 100.00 | WP_002682030.1 |
| HCFPAPOD_1 | 311681 | 313603 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 89.55 | 100.00 | WP_063856407.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| HCFPAPOD_119 | 67 | 746 | repUS2 | 682 / 681 | 98.53 | BFU30316 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| HCFPAPOD_1 | 0.0 | 1.0 | 0.0 |
| HCFPAPOD_2 | 0.0 | 1.0 | 0.0 |
| HCFPAPOD_13 | 0.0 | 1.0 | 0.0 |
| HCFPAPOD_24 | 0.0 | 1.0 | 0.0 |
| HCFPAPOD_35 | 0.0 | 1.0 | 0.0 |
| HCFPAPOD_46 | 0.0 | 1.0 | 0.0 |
| HCFPAPOD_55 | 0.0 | 1.0 | 0.0 |
| HCFPAPOD_56 | 0.0 | 1.0 | 0.0 |
| HCFPAPOD_57 | 0.0 | 1.0 | 0.0 |
| HCFPAPOD_58 | 0.0 | 1.0 | 0.0 |
| HCFPAPOD_59 | 0.0 | 1.0 | 0.0 |
| HCFPAPOD_60 | 0.0 | 1.0 | 0.0 |
| HCFPAPOD_61 | 0.0 | 1.0 | 0.0 |
| HCFPAPOD_62 | 0.0 | 1.0 | 0.0 |
| HCFPAPOD_63 | 0.0 | 1.0 | 0.0 |
| HCFPAPOD_64 | 0.0 | 1.0 | 0.0 |
| HCFPAPOD_65 | 0.0 | 1.0 | 0.0 |
| HCFPAPOD_66 | 0.0 | 1.0 | 0.0 |
| HCFPAPOD_67 | 0.0 | 1.0 | 0.0 |
| HCFPAPOD_68 | 0.0 | 1.0 | 0.0 |
| HCFPAPOD_69 | 0.0 | 1.0 | 0.0 |
| HCFPAPOD_70 | 0.0 | 1.0 | 0.0 |
| HCFPAPOD_71 | 0.0 | 1.0 | 0.0 |
| HCFPAPOD_72 | 0.0 | 1.0 | 0.0 |
| HCFPAPOD_73 | 0.0 | 1.0 | 0.0 |
| HCFPAPOD_74 | 0.0 | 1.0 | 0.0 |
| HCFPAPOD_75 | 0.0 | 1.0 | 0.0 |
| HCFPAPOD_76 | 0.0 | 1.0 | 0.0 |
| HCFPAPOD_77 | 1.0 | 0.0 | 1.0 |
| HCFPAPOD_78 | 0.0 | 1.0 | 0.0 |
| HCFPAPOD_79 | 1.0 | 0.0 | 1.0 |
| HCFPAPOD_80 | 1.0 | 0.0 | 1.0 |
| HCFPAPOD_81 | 0.0 | 1.0 | 0.0 |
| HCFPAPOD_82 | 0.0 | 1.0 | 0.0 |
| HCFPAPOD_83 | 0.0 | 1.0 | 0.0 |
| HCFPAPOD_84 | 0.0 | 1.0 | 0.0 |
| HCFPAPOD_85 | 0.0 | 1.0 | 0.0 |
| HCFPAPOD_86 | 0.0 | 1.0 | 0.0 |
| HCFPAPOD_87 | 0.0 | 1.0 | 0.0 |
| HCFPAPOD_88 | 0.0 | 1.0 | 0.0 |
| HCFPAPOD_89 | 0.0 | 1.0 | 0.0 |
| HCFPAPOD_90 | 0.0 | 1.0 | 0.0 |
| HCFPAPOD_91 | 0.0 | 1.0 | 0.0 |
| HCFPAPOD_92 | 0.0 | 1.0 | 0.0 |
| HCFPAPOD_93 | 0.0 | 1.0 | 0.0 |
| HCFPAPOD_94 | 0.0 | 1.0 | 0.0 |
| HCFPAPOD_95 | 0.0 | 1.0 | 0.0 |
| HCFPAPOD_96 | 1.0 | 0.0 | 1.0 |
| HCFPAPOD_97 | 0.0 | 1.0 | 0.0 |
| HCFPAPOD_98 | 0.0 | 1.0 | 0.0 |
| HCFPAPOD_99 | 0.0 | 1.0 | 0.0 |
| HCFPAPOD_100 | 1.0 | 0.0 | 1.0 |
| HCFPAPOD_101 | 1.0 | 0.0 | 1.0 |
| HCFPAPOD_102 | 0.0 | 1.0 | 0.0 |
| HCFPAPOD_103 | 1.0 | 0.0 | 1.0 |
| HCFPAPOD_104 | 0.0 | 1.0 | 0.0 |
| HCFPAPOD_105 | 1.0 | 0.0 | 1.0 |
| HCFPAPOD_106 | 1.0 | 0.0 | 1.0 |
| HCFPAPOD_107 | 1.0 | 0.0 | 1.0 |
| HCFPAPOD_108 | 0.0 | 1.0 | 0.0 |
| HCFPAPOD_109 | 1.0 | 0.0 | 1.0 |
| HCFPAPOD_110 | 1.0 | 0.0 | 1.0 |
| HCFPAPOD_111 | 1.0 | 0.0 | 1.0 |
| HCFPAPOD_112 | 1.0 | 0.0 | 1.0 |
| HCFPAPOD_113 | 0.0 | 1.0 | 0.0 |
| HCFPAPOD_114 | 1.0 | 0.0 | 1.0 |
| HCFPAPOD_115 | 0.0 | 1.0 | 0.0 |
| HCFPAPOD_117 | 1.0 | 0.0 | 1.0 |
| HCFPAPOD_118 | 0.0 | 1.0 | 0.0 |
| HCFPAPOD_119 | 1.0 | 0.0 | 1.0 |
| HCFPAPOD_120 | 0.0 | 1.0 | 0.0 |
| HCFPAPOD_121 | 1.0 | 0.0 | 1.0 |
| HCFPAPOD_122 | 1.0 | 0.0 | 1.0 |
| HCFPAPOD_123 | 1.0 | 0.0 | 1.0 |
| HCFPAPOD_124 | 1.0 | 0.0 | 1.0 |
| HCFPAPOD_125 | 1.0 | 0.0 | 1.0 |
| HCFPAPOD_126 | 0.0 | 1.0 | 0.0 |
| HCFPAPOD_128 | 1.0 | 0.0 | 1.0 |
| HCFPAPOD_129 | 0.0 | 1.0 | 0.0 |
| HCFPAPOD_130 | 1.0 | 0.0 | 1.0 |
| HCFPAPOD_131 | 1.0 | 0.0 | 1.0 |
| HCFPAPOD_132 | 0.0 | 1.0 | 0.0 |
| HCFPAPOD_133 | 0.0 | 1.0 | 0.0 |
| HCFPAPOD_134 | 0.0 | 1.0 | 0.0 |
| HCFPAPOD_135 | 1.0 | 0.0 | 1.0 |
| HCFPAPOD_136 | 1.0 | 0.0 | 1.0 |
| HCFPAPOD_137 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| HCFPAPOD_56 | 71280 | 80338 | False | Unknown | VOG6183, |
| HCFPAPOD_60 | 305669 | 318624 | False | Siphoviridae | VOG4690, |
Phigaro v2.4.0 (Database: Jan. 2024 release)