Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 4 | 0 | 0 | 4.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| CPPMEGIM_14 | 78770 | 79735 | CfxA2 | ARO:3003002 | CfxA2 | 100.00 | 100.00 | AF118110.1 |
| CPPMEGIM_10 | 9271 | 11196 | tet(Q) | ARO:3000191 | tet(Q) | 96.41 | 97.56 | Z21523.1 |
| CPPMEGIM_13 | 866 | 2071 | Mef(En2) | ARO:3004659 | Mef(En2) | 99.25 | 100.00 | AF251288.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| CPPMEGIM_14 | 78770 | 79735 | cfxA3 | Ampicillin | 99.90 | 100.00 | AF472622 |
| CPPMEGIM_14 | 78770 | 79735 | cfxA4 | Unknown Beta-lactam | 99.90 | 100.00 | AY769933 |
| CPPMEGIM_14 | 78770 | 79735 | cfxA5 | Unknown Beta-lactam | 99.90 | 100.00 | AY769934 |
| CPPMEGIM_14 | 78770 | 79735 | cfxA | Cefoxitin, Ampicillin | 99.90 | 100.00 | U38243 |
| CPPMEGIM_10 | 9271 | 11196 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 99.84 | 100.00 | L33696 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| CPPMEGIM_14 | 78773 | 79735 | cfxA | CfxA family broad-spectrum class A beta-lactamase | EXACTX | 100.00 | 100.00 | WP_004339683.1 |
| CPPMEGIM_10 | 9271 | 11193 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 99.53 | 100.00 | WP_063856407.1 |
| CPPMEGIM_13 | 2096 | 2605 | lnu(AN2) | lincosamide nucleotidyltransferase Lnu(AN2) | BLASTX | 99.41 | 100.00 | WP_004308783.1 |
| CPPMEGIM_13 | 866 | 2068 | mef(En2) | macrolide efflux MFS transporter Mef(En2) | BLASTX | 99.25 | 100.00 | WP_063853729.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| CPPMEGIM_1 | 0.0 | 1.0 | 0.0 |
| CPPMEGIM_2 | 0.0 | 1.0 | 0.0 |
| CPPMEGIM_3 | 0.0 | 1.0 | 0.0 |
| CPPMEGIM_4 | 0.0 | 1.0 | 0.0 |
| CPPMEGIM_5 | 0.0 | 1.0 | 0.0 |
| CPPMEGIM_6 | 0.0 | 1.0 | 0.0 |
| CPPMEGIM_7 | 0.0 | 1.0 | 0.0 |
| CPPMEGIM_8 | 0.0 | 1.0 | 0.0 |
| CPPMEGIM_9 | 0.0 | 1.0 | 0.0 |
| CPPMEGIM_10 | 0.0 | 1.0 | 0.0 |
| CPPMEGIM_11 | 0.0 | 1.0 | 0.0 |
| CPPMEGIM_12 | 0.0 | 1.0 | 0.0 |
| CPPMEGIM_13 | 0.0 | 1.0 | 0.0 |
| CPPMEGIM_14 | 0.0 | 1.0 | 0.0 |
| CPPMEGIM_15 | 1.0 | 0.0 | 1.0 |
| CPPMEGIM_16 | 1.0 | 0.0 | 1.0 |
| CPPMEGIM_17 | 1.0 | 0.0 | 1.0 |
| CPPMEGIM_18 | 0.0 | 1.0 | 0.0 |
| CPPMEGIM_19 | 1.0 | 0.0 | 1.0 |
| CPPMEGIM_20 | 1.0 | 0.0 | 1.0 |
| CPPMEGIM_21 | 0.0 | 1.0 | 0.0 |
| CPPMEGIM_22 | 0.0 | 1.0 | 0.0 |
| CPPMEGIM_23 | 0.0 | 1.0 | 0.0 |
| CPPMEGIM_24 | 0.0 | 1.0 | 0.0 |
| CPPMEGIM_25 | 0.0 | 1.0 | 0.0 |
| CPPMEGIM_26 | 1.0 | 0.0 | 1.0 |
| CPPMEGIM_27 | 0.0 | 1.0 | 0.0 |
| CPPMEGIM_28 | 0.0 | 1.0 | 0.0 |
| CPPMEGIM_29 | 0.0 | 1.0 | 0.0 |
| CPPMEGIM_30 | 1.0 | 0.0 | 1.0 |
| CPPMEGIM_31 | 1.0 | 0.0 | 1.0 |
| CPPMEGIM_32 | 1.0 | 0.0 | 1.0 |
| CPPMEGIM_33 | 0.0 | 1.0 | 0.0 |
| CPPMEGIM_34 | 0.0 | 1.0 | 0.0 |
| CPPMEGIM_35 | 1.0 | 0.0 | 1.0 |
| CPPMEGIM_36 | 0.0 | 1.0 | 0.0 |
| CPPMEGIM_37 | 1.0 | 0.0 | 1.0 |
| CPPMEGIM_38 | 1.0 | 0.0 | 1.0 |
| CPPMEGIM_39 | 1.0 | 0.0 | 1.0 |
| CPPMEGIM_40 | 0.0 | 1.0 | 0.0 |
| CPPMEGIM_41 | 0.0 | 1.0 | 0.0 |
| CPPMEGIM_43 | 1.0 | 0.0 | 1.0 |
| CPPMEGIM_44 | 1.0 | 0.0 | 1.0 |
| CPPMEGIM_45 | 0.0 | 1.0 | 0.0 |
| CPPMEGIM_46 | 0.0 | 1.0 | 0.0 |
| CPPMEGIM_47 | 1.0 | 0.0 | 1.0 |
| CPPMEGIM_48 | 0.0 | 1.0 | 0.0 |
| CPPMEGIM_49 | 1.0 | 0.0 | 1.0 |
| CPPMEGIM_50 | 1.0 | 0.0 | 1.0 |
| CPPMEGIM_51 | 1.0 | 0.0 | 1.0 |
| CPPMEGIM_56 | 0.0 | 1.0 | 0.0 |
| CPPMEGIM_67 | 0.0 | 1.0 | 0.0 |
| CPPMEGIM_75 | 0.0 | 1.0 | 0.0 |
| CPPMEGIM_76 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| No hit found | |||||
Phigaro v2.4.0 (Database: Jan. 2024 release)