Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 8 | 0 | 1 | 8.06 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| HIBLDHAL_57 | 104259 | 104993 | ErmG | ARO:3000522 | ErmG | 99.18 | 100.00 | L42817.1 |
| HIBLDHAL_160 | 48097 | 49233 | tet(X) | ARO:3000205 | tet(X) | 99.21 | 97.42 | M37699.1 |
| HIBLDHAL_160 | 47058 | 47921 | aadS | ARO:3004683 | aadS | 100.00 | 100.00 | M72415.1 |
| HIBLDHAL_203 | 10174 | 10989 | sul2 | ARO:3000412 | sul2 | 100.00 | 100.00 | AY055428.1 |
| HIBLDHAL_37 | 1 | 1629 | tet(Q) | ARO:3000191 | tet(Q) | 97.42 | 82.65 | Z21523.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| HIBLDHAL_203 | 10174 | 10989 | sul2 | Sulfamethoxazole | 100.00 | 100.00 | AY034138 |
| HIBLDHAL_160 | 48097 | 49263 | tet(X) | Doxycycline, Tetracycline, Minocycline, Tigecycline | 99.74 | 100.00 | M37699 |
| HIBLDHAL_57 | 104259 | 104993 | erm(G) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.32 | 100.00 | M15332 |
| HIBLDHAL_37 | 1 | 1630 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 97.42 | 84.63 | Z21523 |
| HIBLDHAL_57 | 105765 | 107071 | msr(D) | Erythromycin, Azithromycin, Telithromycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 97.40 | 89.21 | AF227520 |
| HIBLDHAL_220 | 4089 | 5303 | mef(A) | Erythromycin, Azithromycin | 94.24 | 99.75 | AF227520 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| HIBLDHAL_160 | 47061 | 47921 | aadS | aminoglycoside 6-adenylyltransferase AadS | EXACTX | 100.00 | 100.00 | WP_003013318.1 |
| HIBLDHAL_170 | 6202 | 7107 | blaMUN-1 | MUN family extended-spectrum class A beta-lactamase MUN-1 | ALLELEX | 100.00 | 100.00 | WP_206340447.1 |
| HIBLDHAL_203 | 10177 | 10989 | sul2 | sulfonamide-resistant dihydropteroate synthase Sul2 | EXACTX | 100.00 | 100.00 | WP_001043260.1 |
| HIBLDHAL_160 | 48100 | 49263 | tet(X2) | tetracycline-inactivating monooxygenase Tet(X2) | BLASTX | 99.74 | 100.00 | WP_008651082.1 |
| HIBLDHAL_57 | 104262 | 104993 | erm(G) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(G) | BLASTX | 99.59 | 100.00 | WP_063844791.1 |
| HIBLDHAL_37 | 1 | 1629 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | PARTIAL_CONTIG_ENDX | 97.42 | 84.71 | WP_002560998.1 |
| HIBLDHAL_220 | 4089 | 5312 | mef(A) | macrolide efflux MFS transporter Mef(A) | BLASTX | 96.57 | 100.00 | WP_012102963.1 |
| HIBLDHAL_160 | 49435 | 50184 | tet(X1) | tetracycline-inactivating monooxygenase Tet(X1) | PARTIALX | 99.60 | 65.96 | WP_204376222.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| HIBLDHAL_144 | 76957 | 75377 | GroEL | 0.0 | folding of newly synthesized proteins, preventing misfolding and aggregation | 80.64 | 96.70 | BAA04222 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| HIBLDHAL_54 | 7 | 587 | repUS2 | 584 / 681 | 80.48 | BFU30316 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| HIBLDHAL_1 | 0.0 | 1.0 | 0.0 |
| HIBLDHAL_2 | 0.0 | 1.0 | 0.0 |
| HIBLDHAL_3 | 1.0 | 0.0 | 1.0 |
| HIBLDHAL_4 | 1.0 | 0.0 | 1.0 |
| HIBLDHAL_5 | 1.0 | 0.0 | 1.0 |
| HIBLDHAL_6 | 1.0 | 0.0 | 1.0 |
| HIBLDHAL_7 | 1.0 | 0.0 | 1.0 |
| HIBLDHAL_8 | 1.0 | 0.0 | 1.0 |
| HIBLDHAL_9 | 1.0 | 0.0 | 1.0 |
| HIBLDHAL_10 | 1.0 | 0.0 | 1.0 |
| HIBLDHAL_11 | 0.0 | 1.0 | 0.0 |
| HIBLDHAL_12 | 1.0 | 0.0 | 1.0 |
| HIBLDHAL_13 | 0.0 | 1.0 | 0.0 |
| HIBLDHAL_14 | 1.0 | 0.0 | 1.0 |
| HIBLDHAL_15 | 0.0 | 1.0 | 0.0 |
| HIBLDHAL_16 | 0.0 | 1.0 | 0.0 |
| HIBLDHAL_17 | 1.0 | 0.0 | 1.0 |
| HIBLDHAL_18 | 0.0 | 1.0 | 0.0 |
| HIBLDHAL_19 | 1.0 | 0.0 | 1.0 |
| HIBLDHAL_20 | 0.0 | 1.0 | 0.0 |
| HIBLDHAL_21 | 1.0 | 0.0 | 1.0 |
| HIBLDHAL_22 | 1.0 | 0.0 | 1.0 |
| HIBLDHAL_23 | 1.0 | 0.0 | 1.0 |
| HIBLDHAL_24 | 0.0 | 1.0 | 0.0 |
| HIBLDHAL_25 | 0.0 | 1.0 | 0.0 |
| HIBLDHAL_26 | 0.0 | 1.0 | 0.0 |
| HIBLDHAL_27 | 0.0 | 1.0 | 0.0 |
| HIBLDHAL_28 | 1.0 | 0.0 | 1.0 |
| HIBLDHAL_29 | 1.0 | 0.0 | 1.0 |
| HIBLDHAL_30 | 1.0 | 0.0 | 1.0 |
| HIBLDHAL_31 | 1.0 | 0.0 | 1.0 |
| HIBLDHAL_32 | 1.0 | 0.0 | 1.0 |
| HIBLDHAL_33 | 1.0 | 0.0 | 1.0 |
| HIBLDHAL_34 | 1.0 | 0.0 | 1.0 |
| HIBLDHAL_35 | 0.0 | 1.0 | 0.0 |
| HIBLDHAL_36 | 0.0 | 1.0 | 0.0 |
| HIBLDHAL_37 | 1.0 | 0.0 | 1.0 |
| HIBLDHAL_38 | 1.0 | 0.0 | 1.0 |
| HIBLDHAL_39 | 1.0 | 0.0 | 1.0 |
| HIBLDHAL_40 | 1.0 | 0.0 | 1.0 |
| HIBLDHAL_41 | 1.0 | 0.0 | 1.0 |
| HIBLDHAL_42 | 0.0 | 1.0 | 0.0 |
| HIBLDHAL_43 | 1.0 | 0.0 | 1.0 |
| HIBLDHAL_44 | 1.0 | 0.0 | 1.0 |
| HIBLDHAL_45 | 1.0 | 0.0 | 1.0 |
| HIBLDHAL_46 | 0.0 | 1.0 | 0.0 |
| HIBLDHAL_47 | 0.0 | 1.0 | 0.0 |
| HIBLDHAL_48 | 0.0 | 1.0 | 0.0 |
| HIBLDHAL_49 | 1.0 | 0.0 | 1.0 |
| HIBLDHAL_50 | 1.0 | 0.0 | 1.0 |
| HIBLDHAL_51 | 1.0 | 0.0 | 1.0 |
| HIBLDHAL_52 | 0.0 | 1.0 | 0.0 |
| HIBLDHAL_53 | 1.0 | 0.0 | 1.0 |
| HIBLDHAL_57 | 0.0 | 1.0 | 0.0 |
| HIBLDHAL_68 | 0.0 | 1.0 | 0.0 |
| HIBLDHAL_79 | 0.0 | 1.0 | 0.0 |
| HIBLDHAL_90 | 0.0 | 1.0 | 0.0 |
| HIBLDHAL_101 | 0.0 | 1.0 | 0.0 |
| HIBLDHAL_112 | 0.0 | 1.0 | 0.0 |
| HIBLDHAL_113 | 0.0 | 1.0 | 0.0 |
| HIBLDHAL_124 | 0.0 | 1.0 | 0.0 |
| HIBLDHAL_135 | 1.0 | 0.0 | 1.0 |
| HIBLDHAL_144 | 0.0 | 1.0 | 0.0 |
| HIBLDHAL_145 | 0.0 | 1.0 | 0.0 |
| HIBLDHAL_146 | 0.0 | 1.0 | 0.0 |
| HIBLDHAL_147 | 0.0 | 1.0 | 0.0 |
| HIBLDHAL_148 | 0.0 | 1.0 | 0.0 |
| HIBLDHAL_149 | 0.0 | 1.0 | 0.0 |
| HIBLDHAL_150 | 0.0 | 1.0 | 0.0 |
| HIBLDHAL_151 | 0.0 | 1.0 | 0.0 |
| HIBLDHAL_152 | 0.0 | 1.0 | 0.0 |
| HIBLDHAL_153 | 0.0 | 1.0 | 0.0 |
| HIBLDHAL_154 | 0.0 | 1.0 | 0.0 |
| HIBLDHAL_155 | 0.0 | 1.0 | 0.0 |
| HIBLDHAL_156 | 0.0 | 1.0 | 0.0 |
| HIBLDHAL_157 | 0.0 | 1.0 | 0.0 |
| HIBLDHAL_158 | 0.0 | 1.0 | 0.0 |
| HIBLDHAL_159 | 0.0 | 1.0 | 0.0 |
| HIBLDHAL_160 | 0.0 | 1.0 | 0.0 |
| HIBLDHAL_161 | 0.0 | 1.0 | 0.0 |
| HIBLDHAL_162 | 0.0 | 1.0 | 0.0 |
| HIBLDHAL_163 | 0.0 | 1.0 | 0.0 |
| HIBLDHAL_164 | 0.0 | 1.0 | 0.0 |
| HIBLDHAL_165 | 0.0 | 1.0 | 0.0 |
| HIBLDHAL_166 | 0.0 | 1.0 | 0.0 |
| HIBLDHAL_167 | 0.0 | 1.0 | 0.0 |
| HIBLDHAL_168 | 0.0 | 1.0 | 0.0 |
| HIBLDHAL_169 | 0.0 | 1.0 | 0.0 |
| HIBLDHAL_170 | 0.0 | 1.0 | 0.0 |
| HIBLDHAL_171 | 0.0 | 1.0 | 0.0 |
| HIBLDHAL_172 | 0.0 | 1.0 | 0.0 |
| HIBLDHAL_173 | 0.0 | 1.0 | 0.0 |
| HIBLDHAL_174 | 0.0 | 1.0 | 0.0 |
| HIBLDHAL_175 | 0.0 | 1.0 | 0.0 |
| HIBLDHAL_176 | 0.0 | 1.0 | 0.0 |
| HIBLDHAL_177 | 0.0 | 1.0 | 0.0 |
| HIBLDHAL_178 | 0.0 | 1.0 | 0.0 |
| HIBLDHAL_179 | 0.0 | 1.0 | 0.0 |
| HIBLDHAL_180 | 0.0 | 1.0 | 0.0 |
| HIBLDHAL_181 | 0.0 | 1.0 | 0.0 |
| HIBLDHAL_182 | 0.0 | 1.0 | 0.0 |
| HIBLDHAL_183 | 0.0 | 1.0 | 0.0 |
| HIBLDHAL_184 | 0.0 | 1.0 | 0.0 |
| HIBLDHAL_185 | 0.0 | 1.0 | 0.0 |
| HIBLDHAL_186 | 0.0 | 1.0 | 0.0 |
| HIBLDHAL_187 | 0.0 | 1.0 | 0.0 |
| HIBLDHAL_188 | 1.0 | 0.0 | 1.0 |
| HIBLDHAL_189 | 0.0 | 1.0 | 0.0 |
| HIBLDHAL_190 | 0.0 | 1.0 | 0.0 |
| HIBLDHAL_191 | 0.0 | 1.0 | 0.0 |
| HIBLDHAL_192 | 0.0 | 1.0 | 0.0 |
| HIBLDHAL_193 | 1.0 | 0.0 | 1.0 |
| HIBLDHAL_194 | 0.0 | 1.0 | 0.0 |
| HIBLDHAL_195 | 0.0 | 1.0 | 0.0 |
| HIBLDHAL_196 | 0.0 | 1.0 | 0.0 |
| HIBLDHAL_197 | 1.0 | 0.0 | 1.0 |
| HIBLDHAL_198 | 0.0 | 1.0 | 0.0 |
| HIBLDHAL_199 | 0.0 | 1.0 | 0.0 |
| HIBLDHAL_200 | 1.0 | 0.0 | 1.0 |
| HIBLDHAL_201 | 1.0 | 0.0 | 1.0 |
| HIBLDHAL_202 | 0.0 | 1.0 | 0.0 |
| HIBLDHAL_203 | 1.0 | 0.0 | 1.0 |
| HIBLDHAL_204 | 1.0 | 0.0 | 1.0 |
| HIBLDHAL_205 | 1.0 | 0.0 | 1.0 |
| HIBLDHAL_206 | 0.0 | 1.0 | 0.0 |
| HIBLDHAL_207 | 0.0 | 1.0 | 0.0 |
| HIBLDHAL_208 | 0.0 | 1.0 | 0.0 |
| HIBLDHAL_209 | 1.0 | 0.0 | 1.0 |
| HIBLDHAL_210 | 0.0 | 1.0 | 0.0 |
| HIBLDHAL_211 | 0.0 | 1.0 | 0.0 |
| HIBLDHAL_212 | 0.0 | 1.0 | 0.0 |
| HIBLDHAL_213 | 1.0 | 0.0 | 1.0 |
| HIBLDHAL_214 | 0.0 | 1.0 | 0.0 |
| HIBLDHAL_215 | 0.0 | 1.0 | 0.0 |
| HIBLDHAL_216 | 0.0 | 1.0 | 0.0 |
| HIBLDHAL_217 | 0.0 | 1.0 | 0.0 |
| HIBLDHAL_218 | 1.0 | 0.0 | 1.0 |
| HIBLDHAL_219 | 1.0 | 0.0 | 1.0 |
| HIBLDHAL_220 | 0.0 | 1.0 | 0.0 |
| HIBLDHAL_221 | 1.0 | 0.0 | 1.0 |
| HIBLDHAL_222 | 1.0 | 0.0 | 1.0 |
| HIBLDHAL_223 | 0.0 | 1.0 | 0.0 |
| HIBLDHAL_225 | 1.0 | 0.0 | 1.0 |
| HIBLDHAL_226 | 0.0 | 1.0 | 0.0 |
| HIBLDHAL_227 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| HIBLDHAL_13 | 33854 | 44728 | False | Siphoviridae | VOG0749, |
| HIBLDHAL_90 | 83293 | 93044 | True | Unknown | VOG8336, |
Phigaro v2.4.0 (Database: Jan. 2024 release)