Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 6 | 0 | 0 | 6.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| CKBMOFDJ_556 | 188377 | 189582 | Mef(En2) | ARO:3004659 | Mef(En2) | 99.25 | 100.00 | AF251288.1 |
| CKBMOFDJ_667 | 40003 | 41928 | tet(Q) | ARO:3000191 | tet(Q) | 96.41 | 97.56 | Z21523.1 |
| CKBMOFDJ_157 | 39616 | 40581 | CfxA2 | ARO:3003002 | CfxA2 | 100.00 | 100.00 | AF118110.1 |
| CKBMOFDJ_101 | 10053 | 10943 | CblA-1 | ARO:3002999 | CblA-1 | 100.00 | 100.00 | GQ343019.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| CKBMOFDJ_157 | 39616 | 40581 | cfxA3 | Ampicillin | 99.90 | 100.00 | AF472622 |
| CKBMOFDJ_157 | 39616 | 40581 | cfxA4 | Unknown Beta-lactam | 99.90 | 100.00 | AY769933 |
| CKBMOFDJ_157 | 39616 | 40581 | cfxA5 | Unknown Beta-lactam | 99.90 | 100.00 | AY769934 |
| CKBMOFDJ_157 | 39616 | 40581 | cfxA | Cefoxitin, Ampicillin | 99.90 | 100.00 | U38243 |
| CKBMOFDJ_667 | 40003 | 41928 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 99.84 | 100.00 | L33696 |
| CKBMOFDJ_556 | 12101 | 13318 | mef(A) | Erythromycin, Azithromycin | 95.24 | 100.00 | AF227520 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| CKBMOFDJ_101 | 10056 | 10943 | cblA | CblA family class A beta-lactamase | EXACTX | 100.00 | 100.00 | WP_005827792.1 |
| CKBMOFDJ_157 | 39619 | 40581 | cfxA | CfxA family broad-spectrum class A beta-lactamase | EXACTX | 100.00 | 100.00 | WP_004339683.1 |
| CKBMOFDJ_556 | 189607 | 190116 | lnu(AN2) | lincosamide nucleotidyltransferase Lnu(AN2) | EXACTX | 100.00 | 100.00 | WP_004308783.1 |
| CKBMOFDJ_667 | 40003 | 41925 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 99.53 | 100.00 | WP_063856407.1 |
| CKBMOFDJ_556 | 188377 | 189579 | mef(En2) | macrolide efflux MFS transporter Mef(En2) | BLASTX | 99.25 | 100.00 | WP_063853729.1 |
| CKBMOFDJ_556 | 12101 | 13315 | mef(A) | macrolide efflux MFS transporter Mef(A) | BLASTX | 99.01 | 99.26 | WP_012102963.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| CKBMOFDJ_748 | 693 | 1183 | repUS2 | 493 / 681 | 97.57 | BFU30316 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| CKBMOFDJ_1 | 0.0 | 1.0 | 0.0 |
| CKBMOFDJ_2 | 0.0 | 1.0 | 0.0 |
| CKBMOFDJ_13 | 0.0 | 1.0 | 0.0 |
| CKBMOFDJ_24 | 0.0 | 1.0 | 0.0 |
| CKBMOFDJ_35 | 0.0 | 1.0 | 0.0 |
| CKBMOFDJ_46 | 0.0 | 1.0 | 0.0 |
| CKBMOFDJ_57 | 0.0 | 1.0 | 0.0 |
| CKBMOFDJ_68 | 0.0 | 1.0 | 0.0 |
| CKBMOFDJ_79 | 0.0 | 1.0 | 0.0 |
| CKBMOFDJ_90 | 0.0 | 1.0 | 0.0 |
| CKBMOFDJ_101 | 0.0 | 1.0 | 0.0 |
| CKBMOFDJ_112 | 0.0 | 1.0 | 0.0 |
| CKBMOFDJ_113 | 0.0 | 1.0 | 0.0 |
| CKBMOFDJ_124 | 0.0 | 1.0 | 0.0 |
| CKBMOFDJ_135 | 0.0 | 1.0 | 0.0 |
| CKBMOFDJ_146 | 0.0 | 1.0 | 0.0 |
| CKBMOFDJ_157 | 1.0 | 0.0 | 1.0 |
| CKBMOFDJ_168 | 0.0 | 1.0 | 0.0 |
| CKBMOFDJ_179 | 0.0 | 1.0 | 0.0 |
| CKBMOFDJ_190 | 0.0 | 1.0 | 0.0 |
| CKBMOFDJ_201 | 0.0 | 1.0 | 0.0 |
| CKBMOFDJ_212 | 0.0 | 1.0 | 0.0 |
| CKBMOFDJ_223 | 0.0 | 1.0 | 0.0 |
| CKBMOFDJ_224 | 0.0 | 1.0 | 0.0 |
| CKBMOFDJ_235 | 0.0 | 1.0 | 0.0 |
| CKBMOFDJ_246 | 0.0 | 1.0 | 0.0 |
| CKBMOFDJ_257 | 0.0 | 1.0 | 0.0 |
| CKBMOFDJ_268 | 0.0 | 1.0 | 0.0 |
| CKBMOFDJ_279 | 0.0 | 1.0 | 0.0 |
| CKBMOFDJ_290 | 0.0 | 1.0 | 0.0 |
| CKBMOFDJ_301 | 0.0 | 1.0 | 0.0 |
| CKBMOFDJ_312 | 1.0 | 0.0 | 1.0 |
| CKBMOFDJ_323 | 1.0 | 0.0 | 1.0 |
| CKBMOFDJ_334 | 0.0 | 1.0 | 0.0 |
| CKBMOFDJ_335 | 1.0 | 0.0 | 1.0 |
| CKBMOFDJ_346 | 0.0 | 1.0 | 0.0 |
| CKBMOFDJ_357 | 0.0 | 1.0 | 0.0 |
| CKBMOFDJ_368 | 0.0 | 1.0 | 0.0 |
| CKBMOFDJ_379 | 0.0 | 1.0 | 0.0 |
| CKBMOFDJ_390 | 0.0 | 1.0 | 0.0 |
| CKBMOFDJ_401 | 1.0 | 0.0 | 1.0 |
| CKBMOFDJ_412 | 0.0 | 1.0 | 0.0 |
| CKBMOFDJ_423 | 1.0 | 0.0 | 1.0 |
| CKBMOFDJ_434 | 0.0 | 1.0 | 0.0 |
| CKBMOFDJ_445 | 0.0 | 1.0 | 0.0 |
| CKBMOFDJ_446 | 0.0 | 1.0 | 0.0 |
| CKBMOFDJ_457 | 0.0 | 1.0 | 0.0 |
| CKBMOFDJ_468 | 0.0 | 1.0 | 0.0 |
| CKBMOFDJ_479 | 0.0 | 1.0 | 0.0 |
| CKBMOFDJ_490 | 1.0 | 0.0 | 1.0 |
| CKBMOFDJ_501 | 0.0 | 1.0 | 0.0 |
| CKBMOFDJ_512 | 0.0 | 1.0 | 0.0 |
| CKBMOFDJ_523 | 1.0 | 0.0 | 1.0 |
| CKBMOFDJ_545 | 1.0 | 0.0 | 1.0 |
| CKBMOFDJ_556 | 0.0 | 1.0 | 0.0 |
| CKBMOFDJ_557 | 0.0 | 1.0 | 0.0 |
| CKBMOFDJ_568 | 1.0 | 0.0 | 1.0 |
| CKBMOFDJ_579 | 1.0 | 0.0 | 1.0 |
| CKBMOFDJ_590 | 1.0 | 0.0 | 1.0 |
| CKBMOFDJ_601 | 0.0 | 1.0 | 0.0 |
| CKBMOFDJ_612 | 1.0 | 0.0 | 1.0 |
| CKBMOFDJ_623 | 0.0 | 1.0 | 0.0 |
| CKBMOFDJ_634 | 1.0 | 0.0 | 1.0 |
| CKBMOFDJ_645 | 1.0 | 0.0 | 1.0 |
| CKBMOFDJ_656 | 1.0 | 0.0 | 1.0 |
| CKBMOFDJ_667 | 0.0 | 1.0 | 0.0 |
| CKBMOFDJ_668 | 1.0 | 0.0 | 1.0 |
| CKBMOFDJ_679 | 1.0 | 0.0 | 1.0 |
| CKBMOFDJ_690 | 1.0 | 0.0 | 1.0 |
| CKBMOFDJ_701 | 0.0 | 1.0 | 0.0 |
| CKBMOFDJ_712 | 0.0 | 1.0 | 0.0 |
| CKBMOFDJ_723 | 1.0 | 0.0 | 1.0 |
| CKBMOFDJ_734 | 0.0 | 1.0 | 0.0 |
| CKBMOFDJ_740 | 0.0 | 1.0 | 0.0 |
| CKBMOFDJ_741 | 0.0 | 1.0 | 0.0 |
| CKBMOFDJ_742 | 1.0 | 0.0 | 1.0 |
| CKBMOFDJ_743 | 0.0 | 1.0 | 0.0 |
| CKBMOFDJ_744 | 1.0 | 0.0 | 1.0 |
| CKBMOFDJ_745 | 1.0 | 0.0 | 1.0 |
| CKBMOFDJ_746 | 0.0 | 1.0 | 0.0 |
| CKBMOFDJ_747 | 1.0 | 0.0 | 1.0 |
| CKBMOFDJ_748 | 1.0 | 0.0 | 1.0 |
| CKBMOFDJ_754 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| CKBMOFDJ_124 | 74787 | 76857 | False | Unknown | VOG0189, |
Phigaro v2.4.0 (Database: Jan. 2024 release)