Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 5 | 0 | 1 | 5.10 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| PCHHJCPD_12 | 434863 | 435663 | ErmF | ARO:3000498 | ErmF | 97.37 | 100.00 | M17124.1 |
| PCHHJCPD_12 | 433418 | 434557 | tet(X1) | ARO:3005166 | tet(X1) | 99.72 | 105.57 | AJ311171.1 |
| PCHHJCPD_12 | 432083 | 433219 | tet(X) | ARO:3000205 | tet(X) | 99.47 | 97.42 | M37699.1 |
| PCHHJCPD_12 | 431044 | 431907 | aadS | ARO:3004683 | aadS | 100.00 | 100.00 | M72415.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| PCHHJCPD_12 | 432083 | 433249 | tet(X) | Doxycycline, Tetracycline, Minocycline, Tigecycline | 99.83 | 100.00 | M37699 |
| PCHHJCPD_12 | 434863 | 435663 | erm(F) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.75 | 100.00 | M62487 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| PCHHJCPD_12 | 431047 | 431907 | aadS | aminoglycoside 6-adenylyltransferase AadS | EXACTX | 100.00 | 100.00 | WP_003013318.1 |
| PCHHJCPD_67 | 64419 | 65324 | blaMUN-1 | MUN family extended-spectrum class A beta-lactamase MUN-1 | ALLELEX | 100.00 | 100.00 | WP_206340447.1 |
| PCHHJCPD_12 | 432086 | 433249 | tet(X2) | tetracycline-inactivating monooxygenase Tet(X2) | EXACTX | 100.00 | 100.00 | WP_008651082.1 |
| PCHHJCPD_12 | 433421 | 434557 | tet(X1) | tetracycline-inactivating monooxygenase Tet(X1) | BLASTX | 99.74 | 100.00 | WP_204376222.1 |
| PCHHJCPD_12 | 434863 | 435660 | erm(F) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(F) | BLASTX | 99.25 | 100.00 | WP_063844771.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| PCHHJCPD_45 | 69012 | 70592 | GroEL | 0.0 | folding of newly synthesized proteins, preventing misfolding and aggregation | 86.91 | 96.70 | BAA04222 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| PCHHJCPD_1 | 0.0 | 1.0 | 0.0 |
| PCHHJCPD_2 | 0.0 | 1.0 | 0.0 |
| PCHHJCPD_3 | 0.0 | 1.0 | 0.0 |
| PCHHJCPD_4 | 0.0 | 1.0 | 0.0 |
| PCHHJCPD_5 | 0.0 | 1.0 | 0.0 |
| PCHHJCPD_6 | 0.0 | 1.0 | 0.0 |
| PCHHJCPD_7 | 1.0 | 0.0 | 1.0 |
| PCHHJCPD_8 | 0.0 | 1.0 | 0.0 |
| PCHHJCPD_9 | 0.0 | 1.0 | 0.0 |
| PCHHJCPD_10 | 0.0 | 1.0 | 0.0 |
| PCHHJCPD_11 | 0.0 | 1.0 | 0.0 |
| PCHHJCPD_12 | 0.0 | 1.0 | 0.0 |
| PCHHJCPD_13 | 0.0 | 1.0 | 0.0 |
| PCHHJCPD_14 | 0.0 | 1.0 | 0.0 |
| PCHHJCPD_15 | 0.0 | 1.0 | 0.0 |
| PCHHJCPD_16 | 0.0 | 1.0 | 0.0 |
| PCHHJCPD_17 | 0.0 | 1.0 | 0.0 |
| PCHHJCPD_18 | 1.0 | 0.0 | 1.0 |
| PCHHJCPD_19 | 0.0 | 1.0 | 0.0 |
| PCHHJCPD_20 | 0.0 | 1.0 | 0.0 |
| PCHHJCPD_21 | 0.0 | 1.0 | 0.0 |
| PCHHJCPD_22 | 0.0 | 1.0 | 0.0 |
| PCHHJCPD_23 | 0.0 | 1.0 | 0.0 |
| PCHHJCPD_24 | 0.0 | 1.0 | 0.0 |
| PCHHJCPD_25 | 1.0 | 0.0 | 1.0 |
| PCHHJCPD_26 | 0.0 | 1.0 | 0.0 |
| PCHHJCPD_27 | 0.0 | 1.0 | 0.0 |
| PCHHJCPD_28 | 1.0 | 0.0 | 1.0 |
| PCHHJCPD_30 | 1.0 | 0.0 | 1.0 |
| PCHHJCPD_31 | 0.0 | 1.0 | 0.0 |
| PCHHJCPD_32 | 1.0 | 0.0 | 1.0 |
| PCHHJCPD_33 | 0.0 | 1.0 | 0.0 |
| PCHHJCPD_34 | 0.0 | 1.0 | 0.0 |
| PCHHJCPD_35 | 1.0 | 0.0 | 1.0 |
| PCHHJCPD_36 | 0.0 | 1.0 | 0.0 |
| PCHHJCPD_38 | 0.0 | 1.0 | 0.0 |
| PCHHJCPD_39 | 0.0 | 1.0 | 0.0 |
| PCHHJCPD_40 | 0.0 | 1.0 | 0.0 |
| PCHHJCPD_41 | 0.0 | 1.0 | 0.0 |
| PCHHJCPD_45 | 0.0 | 1.0 | 0.0 |
| PCHHJCPD_56 | 0.0 | 1.0 | 0.0 |
| PCHHJCPD_67 | 0.0 | 1.0 | 0.0 |
| PCHHJCPD_78 | 0.0 | 1.0 | 0.0 |
| PCHHJCPD_83 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| PCHHJCPD_1 | 628135 | 632392 | False | Myoviridae | VOG4552, |
| PCHHJCPD_7 | 74491 | 89205 | False | Unknown | VOG3992, |
Phigaro v2.4.0 (Database: Jan. 2024 release)