Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 3 | 0 | 0 | 3.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| APIBCANP_128 | 156887 | 158812 | tet(Q) | ARO:3000191 | tet(Q) | 96.41 | 97.56 | Z21523.1 |
| APIBCANP_102 | 9956 | 10846 | CblA-1 | ARO:3002999 | CblA-1 | 100.00 | 100.00 | GQ343019.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| APIBCANP_128 | 156887 | 158812 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 99.84 | 100.00 | L33696 |
| APIBCANP_73 | 426017 | 427234 | mef(A) | Erythromycin, Azithromycin | 95.24 | 100.00 | AF227520 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| APIBCANP_102 | 9959 | 10846 | cblA | CblA family class A beta-lactamase | EXACTX | 100.00 | 100.00 | WP_005827792.1 |
| APIBCANP_128 | 156890 | 158812 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 99.53 | 100.00 | WP_063856407.1 |
| APIBCANP_73 | 426020 | 427234 | mef(A) | macrolide efflux MFS transporter Mef(A) | BLASTX | 99.01 | 99.26 | WP_012102963.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| APIBCANP_1 | 0.0 | 1.0 | 0.0 |
| APIBCANP_2 | 0.0 | 1.0 | 0.0 |
| APIBCANP_13 | 0.0 | 1.0 | 0.0 |
| APIBCANP_24 | 0.0 | 1.0 | 0.0 |
| APIBCANP_35 | 0.0 | 1.0 | 0.0 |
| APIBCANP_46 | 0.0 | 1.0 | 0.0 |
| APIBCANP_57 | 0.0 | 1.0 | 0.0 |
| APIBCANP_68 | 0.0 | 1.0 | 0.0 |
| APIBCANP_70 | 1.0 | 0.0 | 1.0 |
| APIBCANP_71 | 0.0 | 1.0 | 0.0 |
| APIBCANP_72 | 0.0 | 1.0 | 0.0 |
| APIBCANP_73 | 0.0 | 1.0 | 0.0 |
| APIBCANP_74 | 0.0 | 1.0 | 0.0 |
| APIBCANP_75 | 0.0 | 1.0 | 0.0 |
| APIBCANP_76 | 0.0 | 1.0 | 0.0 |
| APIBCANP_77 | 0.0 | 1.0 | 0.0 |
| APIBCANP_78 | 0.0 | 1.0 | 0.0 |
| APIBCANP_79 | 0.0 | 1.0 | 0.0 |
| APIBCANP_80 | 0.0 | 1.0 | 0.0 |
| APIBCANP_81 | 0.0 | 1.0 | 0.0 |
| APIBCANP_82 | 0.0 | 1.0 | 0.0 |
| APIBCANP_83 | 1.0 | 0.0 | 1.0 |
| APIBCANP_84 | 0.0 | 1.0 | 0.0 |
| APIBCANP_85 | 0.0 | 1.0 | 0.0 |
| APIBCANP_86 | 0.0 | 1.0 | 0.0 |
| APIBCANP_87 | 0.0 | 1.0 | 0.0 |
| APIBCANP_88 | 0.0 | 1.0 | 0.0 |
| APIBCANP_89 | 0.0 | 1.0 | 0.0 |
| APIBCANP_90 | 0.0 | 1.0 | 0.0 |
| APIBCANP_91 | 0.0 | 1.0 | 0.0 |
| APIBCANP_92 | 0.0 | 1.0 | 0.0 |
| APIBCANP_93 | 1.0 | 0.0 | 1.0 |
| APIBCANP_94 | 0.0 | 1.0 | 0.0 |
| APIBCANP_95 | 0.0 | 1.0 | 0.0 |
| APIBCANP_96 | 0.0 | 1.0 | 0.0 |
| APIBCANP_97 | 0.0 | 1.0 | 0.0 |
| APIBCANP_98 | 0.0 | 1.0 | 0.0 |
| APIBCANP_99 | 0.0 | 1.0 | 0.0 |
| APIBCANP_100 | 0.0 | 1.0 | 0.0 |
| APIBCANP_101 | 1.0 | 0.0 | 1.0 |
| APIBCANP_102 | 0.0 | 1.0 | 0.0 |
| APIBCANP_103 | 1.0 | 0.0 | 1.0 |
| APIBCANP_104 | 1.0 | 0.0 | 1.0 |
| APIBCANP_105 | 0.0 | 1.0 | 0.0 |
| APIBCANP_106 | 0.0 | 1.0 | 0.0 |
| APIBCANP_107 | 1.0 | 0.0 | 1.0 |
| APIBCANP_108 | 0.0 | 1.0 | 0.0 |
| APIBCANP_109 | 0.0 | 1.0 | 0.0 |
| APIBCANP_110 | 0.0 | 1.0 | 0.0 |
| APIBCANP_111 | 0.0 | 1.0 | 0.0 |
| APIBCANP_112 | 1.0 | 0.0 | 1.0 |
| APIBCANP_113 | 1.0 | 0.0 | 1.0 |
| APIBCANP_114 | 0.0 | 1.0 | 0.0 |
| APIBCANP_115 | 1.0 | 0.0 | 1.0 |
| APIBCANP_116 | 0.0 | 1.0 | 0.0 |
| APIBCANP_117 | 0.0 | 1.0 | 0.0 |
| APIBCANP_119 | 0.0 | 1.0 | 0.0 |
| APIBCANP_120 | 1.0 | 0.0 | 1.0 |
| APIBCANP_121 | 1.0 | 0.0 | 1.0 |
| APIBCANP_122 | 1.0 | 0.0 | 1.0 |
| APIBCANP_123 | 0.0 | 1.0 | 0.0 |
| APIBCANP_124 | 1.0 | 0.0 | 1.0 |
| APIBCANP_125 | 1.0 | 0.0 | 1.0 |
| APIBCANP_126 | 0.0 | 1.0 | 0.0 |
| APIBCANP_127 | 1.0 | 0.0 | 1.0 |
| APIBCANP_128 | 0.0 | 1.0 | 0.0 |
| APIBCANP_129 | 0.0 | 1.0 | 0.0 |
| APIBCANP_130 | 0.0 | 1.0 | 0.0 |
| APIBCANP_131 | 0.0 | 1.0 | 0.0 |
| APIBCANP_132 | 0.0 | 1.0 | 0.0 |
| APIBCANP_133 | 1.0 | 0.0 | 1.0 |
| APIBCANP_134 | 1.0 | 0.0 | 1.0 |
| APIBCANP_135 | 0.0 | 1.0 | 0.0 |
| APIBCANP_139 | 0.0 | 1.0 | 0.0 |
| APIBCANP_150 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| APIBCANP_74 | 74811 | 76881 | False | Unknown | VOG0189, |
Phigaro v2.4.0 (Database: Jan. 2024 release)