Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 9 | 0 | 0 | 9.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| CJMHLHGM_70 | 191249 | 192454 | Mef(En2) | ARO:3004659 | Mef(En2) | 99.50 | 100.00 | AF251288.1 |
| CJMHLHGM_19 | 101615 | 102478 | aadS | ARO:3004683 | aadS | 100.00 | 100.00 | M72415.1 |
| CJMHLHGM_19 | 100303 | 101439 | tet(X) | ARO:3000205 | tet(X) | 99.47 | 97.42 | M37699.1 |
| CJMHLHGM_19 | 98965 | 100104 | tet(X1) | ARO:3005166 | tet(X1) | 99.72 | 105.57 | AJ311171.1 |
| CJMHLHGM_19 | 97859 | 98659 | ErmF | ARO:3000498 | ErmF | 97.37 | 100.00 | M17124.1 |
| CJMHLHGM_19 | 81938 | 83863 | tet(Q) | ARO:3000191 | tet(Q) | 97.04 | 97.56 | Z21523.1 |
| CJMHLHGM_21 | 10050 | 10940 | CblA-1 | ARO:3002999 | CblA-1 | 96.28 | 100.00 | GQ343019.1 |
| CJMHLHGM_92 | 8233 | 9198 | CfxA2 | ARO:3003002 | CfxA2 | 100.00 | 100.00 | AF118110.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| CJMHLHGM_19 | 81938 | 83863 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 100.00 | 100.00 | X58717 |
| CJMHLHGM_92 | 8233 | 9198 | cfxA3 | Ampicillin | 99.90 | 100.00 | AF472622 |
| CJMHLHGM_92 | 8233 | 9198 | cfxA4 | Unknown Beta-lactam | 99.90 | 100.00 | AY769933 |
| CJMHLHGM_92 | 8233 | 9198 | cfxA5 | Unknown Beta-lactam | 99.90 | 100.00 | AY769934 |
| CJMHLHGM_92 | 8233 | 9198 | cfxA | Cefoxitin, Ampicillin | 99.90 | 100.00 | U38243 |
| CJMHLHGM_19 | 100273 | 101439 | tet(X) | Doxycycline, Tetracycline, Minocycline, Tigecycline | 99.83 | 100.00 | M37699 |
| CJMHLHGM_19 | 97859 | 98659 | erm(F) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.75 | 100.00 | M62487 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| CJMHLHGM_19 | 101615 | 102475 | aadS | aminoglycoside 6-adenylyltransferase AadS | EXACTX | 100.00 | 100.00 | WP_003013318.1 |
| CJMHLHGM_92 | 8236 | 9198 | cfxA | CfxA family broad-spectrum class A beta-lactamase | EXACTX | 100.00 | 100.00 | WP_004339683.1 |
| CJMHLHGM_70 | 190715 | 191224 | lnu(AN2) | lincosamide nucleotidyltransferase Lnu(AN2) | EXACTX | 100.00 | 100.00 | WP_004308783.1 |
| CJMHLHGM_19 | 81941 | 83863 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | EXACTX | 100.00 | 100.00 | WP_004293868.1 |
| CJMHLHGM_19 | 100273 | 101436 | tet(X2) | tetracycline-inactivating monooxygenase Tet(X2) | EXACTX | 100.00 | 100.00 | WP_008651082.1 |
| CJMHLHGM_19 | 98965 | 100101 | tet(X1) | tetracycline-inactivating monooxygenase Tet(X1) | BLASTX | 99.74 | 100.00 | WP_204376222.1 |
| CJMHLHGM_70 | 191252 | 192454 | mef(En2) | macrolide efflux MFS transporter Mef(En2) | BLASTX | 99.50 | 100.00 | WP_063853729.1 |
| CJMHLHGM_19 | 97862 | 98659 | erm(F) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(F) | BLASTX | 99.25 | 100.00 | WP_063844771.1 |
| CJMHLHGM_21 | 10053 | 10940 | cblA | CblA family class A beta-lactamase | BLASTX | 96.28 | 100.00 | WP_005827792.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| CJMHLHGM_1 | 0.0 | 1.0 | 0.0 |
| CJMHLHGM_2 | 0.0 | 1.0 | 0.0 |
| CJMHLHGM_13 | 0.0 | 1.0 | 0.0 |
| CJMHLHGM_18 | 0.0 | 1.0 | 0.0 |
| CJMHLHGM_19 | 0.0 | 1.0 | 0.0 |
| CJMHLHGM_20 | 0.0 | 1.0 | 0.0 |
| CJMHLHGM_21 | 0.0 | 1.0 | 0.0 |
| CJMHLHGM_22 | 0.0 | 1.0 | 0.0 |
| CJMHLHGM_23 | 0.0 | 1.0 | 0.0 |
| CJMHLHGM_24 | 0.0 | 1.0 | 0.0 |
| CJMHLHGM_25 | 0.0 | 1.0 | 0.0 |
| CJMHLHGM_26 | 0.0 | 1.0 | 0.0 |
| CJMHLHGM_27 | 0.0 | 1.0 | 0.0 |
| CJMHLHGM_28 | 0.0 | 1.0 | 0.0 |
| CJMHLHGM_29 | 0.0 | 1.0 | 0.0 |
| CJMHLHGM_30 | 0.0 | 1.0 | 0.0 |
| CJMHLHGM_31 | 0.0 | 1.0 | 0.0 |
| CJMHLHGM_32 | 0.0 | 1.0 | 0.0 |
| CJMHLHGM_33 | 0.0 | 1.0 | 0.0 |
| CJMHLHGM_34 | 0.0 | 1.0 | 0.0 |
| CJMHLHGM_35 | 0.0 | 1.0 | 0.0 |
| CJMHLHGM_36 | 0.0 | 1.0 | 0.0 |
| CJMHLHGM_37 | 0.0 | 1.0 | 0.0 |
| CJMHLHGM_38 | 1.0 | 0.0 | 1.0 |
| CJMHLHGM_39 | 0.0 | 1.0 | 0.0 |
| CJMHLHGM_40 | 0.0 | 1.0 | 0.0 |
| CJMHLHGM_41 | 1.0 | 0.0 | 1.0 |
| CJMHLHGM_42 | 0.0 | 1.0 | 0.0 |
| CJMHLHGM_43 | 0.0 | 1.0 | 0.0 |
| CJMHLHGM_44 | 1.0 | 0.0 | 1.0 |
| CJMHLHGM_45 | 0.0 | 1.0 | 0.0 |
| CJMHLHGM_46 | 1.0 | 0.0 | 1.0 |
| CJMHLHGM_47 | 0.0 | 1.0 | 0.0 |
| CJMHLHGM_48 | 0.0 | 1.0 | 0.0 |
| CJMHLHGM_49 | 0.0 | 1.0 | 0.0 |
| CJMHLHGM_50 | 0.0 | 1.0 | 0.0 |
| CJMHLHGM_51 | 1.0 | 0.0 | 1.0 |
| CJMHLHGM_52 | 0.0 | 1.0 | 0.0 |
| CJMHLHGM_53 | 1.0 | 0.0 | 1.0 |
| CJMHLHGM_54 | 1.0 | 0.0 | 1.0 |
| CJMHLHGM_55 | 0.0 | 1.0 | 0.0 |
| CJMHLHGM_56 | 1.0 | 0.0 | 1.0 |
| CJMHLHGM_57 | 1.0 | 0.0 | 1.0 |
| CJMHLHGM_58 | 1.0 | 0.0 | 1.0 |
| CJMHLHGM_59 | 0.0 | 1.0 | 0.0 |
| CJMHLHGM_61 | 1.0 | 0.0 | 1.0 |
| CJMHLHGM_62 | 1.0 | 0.0 | 1.0 |
| CJMHLHGM_63 | 1.0 | 0.0 | 1.0 |
| CJMHLHGM_64 | 1.0 | 0.0 | 1.0 |
| CJMHLHGM_65 | 0.0 | 1.0 | 0.0 |
| CJMHLHGM_66 | 1.0 | 0.0 | 1.0 |
| CJMHLHGM_68 | 1.0 | 0.0 | 1.0 |
| CJMHLHGM_69 | 1.0 | 0.0 | 1.0 |
| CJMHLHGM_70 | 0.0 | 1.0 | 0.0 |
| CJMHLHGM_72 | 1.0 | 0.0 | 1.0 |
| CJMHLHGM_73 | 1.0 | 0.0 | 1.0 |
| CJMHLHGM_74 | 1.0 | 0.0 | 1.0 |
| CJMHLHGM_75 | 1.0 | 0.0 | 1.0 |
| CJMHLHGM_76 | 0.0 | 1.0 | 0.0 |
| CJMHLHGM_77 | 1.0 | 0.0 | 1.0 |
| CJMHLHGM_78 | 1.0 | 0.0 | 1.0 |
| CJMHLHGM_81 | 0.0 | 1.0 | 0.0 |
| CJMHLHGM_92 | 0.0 | 1.0 | 0.0 |
| CJMHLHGM_102 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| CJMHLHGM_13 | 41608 | 46890 | False | Myoviridae | VOG1931, |
| CJMHLHGM_23 | 24392 | 35466 | False | Siphoviridae | VOG0749, |
| CJMHLHGM_36 | 23278 | 29970 | False | Unknown | VOG8909, |
Phigaro v2.4.0 (Database: Jan. 2024 release)