Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 5 | 0 | 0 | 5.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| PAOBGLBN_45 | 82297 | 84271 | tet(Q) | ARO:3000191 | tet(Q) | 100.00 | 97.56 | Z21523.1 |
| PAOBGLBN_7 | 24916 | 25818 | CepA-49 | ARO:3006226 | CepA-49 | 100.00 | 100.00 | NG_050387.1 |
| PAOBGLBN_33 | 8233 | 9198 | CfxA2 | ARO:3003002 | CfxA2 | 100.00 | 100.00 | AF118110.1 |
| PAOBGLBN_7 | 2662 | 3867 | Mef(En2) | ARO:3004659 | Mef(En2) | 99.25 | 100.00 | AF251288.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| PAOBGLBN_7 | 24916 | 25818 | cepA-49 | Unknown Beta-lactam | 100.00 | 100.00 | U05886 |
| PAOBGLBN_45 | 82297 | 84222 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 100.00 | 100.00 | Z21523 |
| PAOBGLBN_33 | 8233 | 9198 | cfxA3 | Ampicillin | 99.90 | 100.00 | AF472622 |
| PAOBGLBN_33 | 8233 | 9198 | cfxA4 | Unknown Beta-lactam | 99.90 | 100.00 | AY769933 |
| PAOBGLBN_33 | 8233 | 9198 | cfxA5 | Unknown Beta-lactam | 99.90 | 100.00 | AY769934 |
| PAOBGLBN_33 | 8233 | 9198 | cfxA | Cefoxitin, Ampicillin | 99.90 | 100.00 | U38243 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| PAOBGLBN_7 | 24916 | 25815 | cepA-49 | extended-spectrum class A beta-lactamase CepA-49 | ALLELEX | 100.00 | 100.00 | WP_008659027.1 |
| PAOBGLBN_33 | 8236 | 9198 | cfxA | CfxA family broad-spectrum class A beta-lactamase | EXACTX | 100.00 | 100.00 | WP_004339683.1 |
| PAOBGLBN_45 | 82300 | 84222 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | EXACTX | 100.00 | 100.00 | WP_002560998.1 |
| PAOBGLBN_7 | 2128 | 2637 | lnu(AN2) | lincosamide nucleotidyltransferase Lnu(AN2) | BLASTX | 99.41 | 100.00 | WP_004308783.1 |
| PAOBGLBN_7 | 2665 | 3867 | mef(En2) | macrolide efflux MFS transporter Mef(En2) | BLASTX | 99.25 | 100.00 | WP_063853729.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| PAOBGLBN_1 | 0.0 | 1.0 | 0.0 |
| PAOBGLBN_2 | 0.0 | 1.0 | 0.0 |
| PAOBGLBN_3 | 0.0 | 1.0 | 0.0 |
| PAOBGLBN_4 | 0.0 | 1.0 | 0.0 |
| PAOBGLBN_5 | 0.0 | 1.0 | 0.0 |
| PAOBGLBN_6 | 0.0 | 1.0 | 0.0 |
| PAOBGLBN_7 | 0.0 | 1.0 | 0.0 |
| PAOBGLBN_8 | 0.0 | 1.0 | 0.0 |
| PAOBGLBN_9 | 0.0 | 1.0 | 0.0 |
| PAOBGLBN_10 | 0.0 | 1.0 | 0.0 |
| PAOBGLBN_11 | 0.0 | 1.0 | 0.0 |
| PAOBGLBN_12 | 0.0 | 1.0 | 0.0 |
| PAOBGLBN_13 | 0.0 | 1.0 | 0.0 |
| PAOBGLBN_14 | 0.0 | 1.0 | 0.0 |
| PAOBGLBN_15 | 0.0 | 1.0 | 0.0 |
| PAOBGLBN_16 | 0.0 | 1.0 | 0.0 |
| PAOBGLBN_17 | 0.0 | 1.0 | 0.0 |
| PAOBGLBN_18 | 0.0 | 1.0 | 0.0 |
| PAOBGLBN_19 | 0.0 | 1.0 | 0.0 |
| PAOBGLBN_20 | 0.0 | 1.0 | 0.0 |
| PAOBGLBN_21 | 0.0 | 1.0 | 0.0 |
| PAOBGLBN_22 | 0.0 | 1.0 | 0.0 |
| PAOBGLBN_23 | 0.0 | 1.0 | 0.0 |
| PAOBGLBN_24 | 0.0 | 1.0 | 0.0 |
| PAOBGLBN_25 | 0.0 | 1.0 | 0.0 |
| PAOBGLBN_26 | 0.0 | 1.0 | 0.0 |
| PAOBGLBN_27 | 0.0 | 1.0 | 0.0 |
| PAOBGLBN_28 | 0.0 | 1.0 | 0.0 |
| PAOBGLBN_29 | 1.0 | 0.0 | 1.0 |
| PAOBGLBN_30 | 0.0 | 1.0 | 0.0 |
| PAOBGLBN_31 | 1.0 | 0.0 | 1.0 |
| PAOBGLBN_32 | 0.0 | 1.0 | 0.0 |
| PAOBGLBN_33 | 0.0 | 1.0 | 0.0 |
| PAOBGLBN_34 | 0.0 | 1.0 | 0.0 |
| PAOBGLBN_35 | 0.0 | 1.0 | 0.0 |
| PAOBGLBN_37 | 1.0 | 0.0 | 1.0 |
| PAOBGLBN_38 | 1.0 | 0.0 | 1.0 |
| PAOBGLBN_40 | 1.0 | 0.0 | 1.0 |
| PAOBGLBN_41 | 0.0 | 1.0 | 0.0 |
| PAOBGLBN_42 | 1.0 | 0.0 | 1.0 |
| PAOBGLBN_43 | 1.0 | 0.0 | 1.0 |
| PAOBGLBN_45 | 0.0 | 1.0 | 0.0 |
| PAOBGLBN_56 | 0.0 | 1.0 | 0.0 |
| PAOBGLBN_67 | 0.0 | 1.0 | 0.0 |
| PAOBGLBN_78 | 0.0 | 1.0 | 0.0 |
| PAOBGLBN_82 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| PAOBGLBN_3 | 131087 | 136938 | False | Myoviridae | VOG0982, |
| PAOBGLBN_7 | 93359 | 100083 | False | Unknown | VOG4568, |
| PAOBGLBN_23 | 95320 | 101195 | False | Siphoviridae | VOG4556, |
Phigaro v2.4.0 (Database: Jan. 2024 release)