Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 7 | 0 | 1 | 7.07 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| PBKCDDFI_2 | 30596 | 31084 | nimE | ARO:3007107 | nimE | 80.86 | 95.29 | CP036548.1 |
| PBKCDDFI_94 | 26094 | 27299 | Mef(En2) | ARO:3004659 | Mef(En2) | 99.50 | 100.00 | AF251288.1 |
| PBKCDDFI_123 | 9139 | 10104 | CfxA2 | ARO:3003002 | CfxA2 | 99.69 | 100.00 | AF118110.1 |
| PBKCDDFI_100 | 6673 | 8646 | tet(Q) | ARO:3000191 | tet(Q) | 96.35 | 100.00 | Z21523.1 |
| PBKCDDFI_134 | 3678 | 4412 | ErmG | ARO:3000522 | ErmG | 99.18 | 100.00 | L42817.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| PBKCDDFI_134 | 3678 | 4412 | erm(G) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.86 | 100.00 | M15332 |
| PBKCDDFI_100 | 6673 | 8598 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 99.84 | 100.00 | L33696 |
| PBKCDDFI_123 | 9139 | 10104 | cfxA3 | Ampicillin | 99.79 | 100.00 | AF472622 |
| PBKCDDFI_123 | 9139 | 10104 | cfxA4 | Unknown Beta-lactam | 99.79 | 100.00 | AY769933 |
| PBKCDDFI_123 | 9139 | 10104 | cfxA5 | Unknown Beta-lactam | 99.79 | 100.00 | AY769934 |
| PBKCDDFI_123 | 9139 | 10104 | cfxA | Cefoxitin, Ampicillin | 99.79 | 100.00 | U38243 |
| PBKCDDFI_76 | 42616 | 43833 | mef(A) | Erythromycin, Azithromycin | 94.99 | 100.00 | AF227520 |
| PBKCDDFI_2 | 30605 | 31084 | nimE | Metronidazole | 81.25 | 93.57 | AM042593 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| PBKCDDFI_94 | 27324 | 27833 | lnu(AN2) | lincosamide nucleotidyltransferase Lnu(AN2) | EXACTX | 100.00 | 100.00 | WP_004308783.1 |
| PBKCDDFI_123 | 9142 | 10104 | cfxA | CfxA family broad-spectrum class A beta-lactamase | BLASTX | 99.69 | 100.00 | WP_004339683.1 |
| PBKCDDFI_134 | 3681 | 4412 | erm(G) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(G) | BLASTX | 99.59 | 100.00 | WP_014387027.1 |
| PBKCDDFI_100 | 6676 | 8598 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 99.53 | 100.00 | WP_063856407.1 |
| PBKCDDFI_94 | 26094 | 27296 | mef(En2) | macrolide efflux MFS transporter Mef(En2) | BLASTX | 99.50 | 100.00 | WP_063853729.1 |
| PBKCDDFI_76 | 42616 | 43836 | mef(A) | macrolide efflux MFS transporter Mef(A) | INTERNAL_STOP | 98.53 | 99.75 | WP_012102963.1 |
| PBKCDDFI_2 | 30599 | 31084 | nimE | 5-nitroimidazole reductase NimE | BLASTX | 80.86 | 95.29 | WP_005812773.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| PBKCDDFI_66 | 51206 | 52786 | GroEL | 0.0 | folding of newly synthesized proteins, preventing misfolding and aggregation | 80.64 | 96.70 | BAA04222 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| PBKCDDFI_1 | 0.0 | 1.0 | 0.0 |
| PBKCDDFI_2 | 0.0 | 1.0 | 0.0 |
| PBKCDDFI_3 | 0.0 | 1.0 | 0.0 |
| PBKCDDFI_4 | 1.0 | 0.0 | 1.0 |
| PBKCDDFI_5 | 1.0 | 0.0 | 1.0 |
| PBKCDDFI_6 | 1.0 | 0.0 | 1.0 |
| PBKCDDFI_7 | 1.0 | 0.0 | 1.0 |
| PBKCDDFI_8 | 1.0 | 0.0 | 1.0 |
| PBKCDDFI_13 | 0.0 | 1.0 | 0.0 |
| PBKCDDFI_24 | 0.0 | 1.0 | 0.0 |
| PBKCDDFI_35 | 0.0 | 1.0 | 0.0 |
| PBKCDDFI_46 | 0.0 | 1.0 | 0.0 |
| PBKCDDFI_50 | 0.0 | 1.0 | 0.0 |
| PBKCDDFI_51 | 0.0 | 1.0 | 0.0 |
| PBKCDDFI_52 | 0.0 | 1.0 | 0.0 |
| PBKCDDFI_53 | 0.0 | 1.0 | 0.0 |
| PBKCDDFI_54 | 0.0 | 1.0 | 0.0 |
| PBKCDDFI_55 | 0.0 | 1.0 | 0.0 |
| PBKCDDFI_56 | 0.0 | 1.0 | 0.0 |
| PBKCDDFI_57 | 0.0 | 1.0 | 0.0 |
| PBKCDDFI_58 | 0.0 | 1.0 | 0.0 |
| PBKCDDFI_59 | 0.0 | 1.0 | 0.0 |
| PBKCDDFI_60 | 0.0 | 1.0 | 0.0 |
| PBKCDDFI_61 | 0.0 | 1.0 | 0.0 |
| PBKCDDFI_62 | 0.0 | 1.0 | 0.0 |
| PBKCDDFI_63 | 0.0 | 1.0 | 0.0 |
| PBKCDDFI_64 | 0.0 | 1.0 | 0.0 |
| PBKCDDFI_65 | 0.0 | 1.0 | 0.0 |
| PBKCDDFI_66 | 0.0 | 1.0 | 0.0 |
| PBKCDDFI_67 | 0.0 | 1.0 | 0.0 |
| PBKCDDFI_68 | 0.0 | 1.0 | 0.0 |
| PBKCDDFI_69 | 0.0 | 1.0 | 0.0 |
| PBKCDDFI_70 | 0.0 | 1.0 | 0.0 |
| PBKCDDFI_71 | 1.0 | 0.0 | 1.0 |
| PBKCDDFI_72 | 0.0 | 1.0 | 0.0 |
| PBKCDDFI_73 | 0.0 | 1.0 | 0.0 |
| PBKCDDFI_74 | 0.0 | 1.0 | 0.0 |
| PBKCDDFI_75 | 0.0 | 1.0 | 0.0 |
| PBKCDDFI_76 | 0.0 | 1.0 | 0.0 |
| PBKCDDFI_77 | 0.0 | 1.0 | 0.0 |
| PBKCDDFI_78 | 0.0 | 1.0 | 0.0 |
| PBKCDDFI_79 | 0.0 | 1.0 | 0.0 |
| PBKCDDFI_80 | 0.0 | 1.0 | 0.0 |
| PBKCDDFI_81 | 0.0 | 1.0 | 0.0 |
| PBKCDDFI_82 | 0.0 | 1.0 | 0.0 |
| PBKCDDFI_83 | 0.0 | 1.0 | 0.0 |
| PBKCDDFI_84 | 0.0 | 1.0 | 0.0 |
| PBKCDDFI_85 | 0.0 | 1.0 | 0.0 |
| PBKCDDFI_86 | 0.0 | 1.0 | 0.0 |
| PBKCDDFI_87 | 0.0 | 1.0 | 0.0 |
| PBKCDDFI_88 | 0.0 | 1.0 | 0.0 |
| PBKCDDFI_89 | 0.0 | 1.0 | 0.0 |
| PBKCDDFI_90 | 0.0 | 1.0 | 0.0 |
| PBKCDDFI_91 | 0.0 | 1.0 | 0.0 |
| PBKCDDFI_92 | 0.0 | 1.0 | 0.0 |
| PBKCDDFI_93 | 0.0 | 1.0 | 0.0 |
| PBKCDDFI_94 | 0.0 | 1.0 | 0.0 |
| PBKCDDFI_95 | 0.0 | 1.0 | 0.0 |
| PBKCDDFI_96 | 0.0 | 1.0 | 0.0 |
| PBKCDDFI_97 | 1.0 | 0.0 | 1.0 |
| PBKCDDFI_98 | 0.0 | 1.0 | 0.0 |
| PBKCDDFI_99 | 0.0 | 1.0 | 0.0 |
| PBKCDDFI_100 | 0.0 | 1.0 | 0.0 |
| PBKCDDFI_101 | 0.0 | 1.0 | 0.0 |
| PBKCDDFI_102 | 0.0 | 1.0 | 0.0 |
| PBKCDDFI_103 | 0.0 | 1.0 | 0.0 |
| PBKCDDFI_104 | 0.0 | 1.0 | 0.0 |
| PBKCDDFI_105 | 0.0 | 1.0 | 0.0 |
| PBKCDDFI_106 | 0.0 | 1.0 | 0.0 |
| PBKCDDFI_107 | 0.0 | 1.0 | 0.0 |
| PBKCDDFI_108 | 0.0 | 1.0 | 0.0 |
| PBKCDDFI_109 | 0.0 | 1.0 | 0.0 |
| PBKCDDFI_110 | 0.0 | 1.0 | 0.0 |
| PBKCDDFI_111 | 1.0 | 0.0 | 1.0 |
| PBKCDDFI_112 | 0.0 | 1.0 | 0.0 |
| PBKCDDFI_113 | 1.0 | 0.0 | 1.0 |
| PBKCDDFI_114 | 0.0 | 1.0 | 0.0 |
| PBKCDDFI_115 | 1.0 | 0.0 | 1.0 |
| PBKCDDFI_116 | 0.0 | 1.0 | 0.0 |
| PBKCDDFI_117 | 0.0 | 1.0 | 0.0 |
| PBKCDDFI_118 | 0.0 | 1.0 | 0.0 |
| PBKCDDFI_119 | 1.0 | 0.0 | 1.0 |
| PBKCDDFI_120 | 0.0 | 1.0 | 0.0 |
| PBKCDDFI_121 | 0.0 | 1.0 | 0.0 |
| PBKCDDFI_122 | 0.0 | 1.0 | 0.0 |
| PBKCDDFI_123 | 0.0 | 1.0 | 0.0 |
| PBKCDDFI_124 | 0.0 | 1.0 | 0.0 |
| PBKCDDFI_125 | 0.0 | 1.0 | 0.0 |
| PBKCDDFI_126 | 1.0 | 0.0 | 1.0 |
| PBKCDDFI_127 | 0.0 | 1.0 | 0.0 |
| PBKCDDFI_128 | 1.0 | 0.0 | 1.0 |
| PBKCDDFI_129 | 0.0 | 1.0 | 0.0 |
| PBKCDDFI_131 | 1.0 | 0.0 | 1.0 |
| PBKCDDFI_132 | 0.0 | 1.0 | 0.0 |
| PBKCDDFI_133 | 1.0 | 0.0 | 1.0 |
| PBKCDDFI_134 | 0.0 | 1.0 | 0.0 |
| PBKCDDFI_135 | 1.0 | 0.0 | 1.0 |
| PBKCDDFI_136 | 1.0 | 0.0 | 1.0 |
| PBKCDDFI_137 | 0.0 | 1.0 | 0.0 |
| PBKCDDFI_138 | 1.0 | 0.0 | 1.0 |
| PBKCDDFI_139 | 0.0 | 1.0 | 0.0 |
| PBKCDDFI_140 | 0.0 | 1.0 | 0.0 |
| PBKCDDFI_141 | 1.0 | 0.0 | 1.0 |
| PBKCDDFI_142 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| PBKCDDFI_99 | 6824 | 17698 | False | Siphoviridae | VOG3992, |
| PBKCDDFI_132 | 24943 | 27588 | False | Myoviridae | VOG10050, |
Phigaro v2.4.0 (Database: Jan. 2024 release)