Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 7 | 0 | 1 | 7.07 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| CKDKPBIN_2 | 137432 | 137920 | nimE | ARO:3007107 | nimE | 80.86 | 95.29 | CP036548.1 |
| CKDKPBIN_128 | 26094 | 27299 | Mef(En2) | ARO:3004659 | Mef(En2) | 99.50 | 100.00 | AF251288.1 |
| CKDKPBIN_132 | 17068 | 19041 | tet(Q) | ARO:3000191 | tet(Q) | 96.35 | 100.00 | Z21523.1 |
| CKDKPBIN_152 | 9139 | 10104 | CfxA2 | ARO:3003002 | CfxA2 | 99.69 | 100.00 | AF118110.1 |
| CKDKPBIN_168 | 99 | 833 | ErmG | ARO:3000522 | ErmG | 99.18 | 100.00 | L42817.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| CKDKPBIN_168 | 99 | 833 | erm(G) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.86 | 100.00 | M15332 |
| CKDKPBIN_132 | 17116 | 19041 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 99.84 | 100.00 | L33696 |
| CKDKPBIN_152 | 9139 | 10104 | cfxA3 | Ampicillin | 99.79 | 100.00 | AF472622 |
| CKDKPBIN_152 | 9139 | 10104 | cfxA4 | Unknown Beta-lactam | 99.79 | 100.00 | AY769933 |
| CKDKPBIN_152 | 9139 | 10104 | cfxA5 | Unknown Beta-lactam | 99.79 | 100.00 | AY769934 |
| CKDKPBIN_152 | 9139 | 10104 | cfxA | Cefoxitin, Ampicillin | 99.79 | 100.00 | U38243 |
| CKDKPBIN_154 | 2217 | 3434 | mef(A) | Erythromycin, Azithromycin | 94.99 | 100.00 | AF227520 |
| CKDKPBIN_2 | 137432 | 137911 | nimE | Metronidazole | 81.25 | 93.57 | AM042593 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| CKDKPBIN_128 | 27324 | 27833 | lnu(AN2) | lincosamide nucleotidyltransferase Lnu(AN2) | EXACTX | 100.00 | 100.00 | WP_004308783.1 |
| CKDKPBIN_152 | 9142 | 10104 | cfxA | CfxA family broad-spectrum class A beta-lactamase | BLASTX | 99.69 | 100.00 | WP_004339683.1 |
| CKDKPBIN_168 | 99 | 830 | erm(G) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(G) | BLASTX | 99.59 | 100.00 | WP_014387027.1 |
| CKDKPBIN_132 | 17116 | 19038 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 99.53 | 100.00 | WP_063856407.1 |
| CKDKPBIN_128 | 26094 | 27296 | mef(En2) | macrolide efflux MFS transporter Mef(En2) | BLASTX | 99.50 | 100.00 | WP_063853729.1 |
| CKDKPBIN_154 | 2217 | 3437 | mef(A) | macrolide efflux MFS transporter Mef(A) | INTERNAL_STOP | 98.53 | 99.75 | WP_012102963.1 |
| CKDKPBIN_2 | 137432 | 137917 | nimE | 5-nitroimidazole reductase NimE | BLASTX | 80.86 | 95.29 | WP_005812773.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| CKDKPBIN_100 | 154693 | 153113 | GroEL | 0.0 | folding of newly synthesized proteins, preventing misfolding and aggregation | 80.64 | 96.70 | BAA04222 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| CKDKPBIN_1 | 0.0 | 1.0 | 0.0 |
| CKDKPBIN_2 | 0.0 | 1.0 | 0.0 |
| CKDKPBIN_3 | 1.0 | 0.0 | 1.0 |
| CKDKPBIN_4 | 1.0 | 0.0 | 1.0 |
| CKDKPBIN_5 | 1.0 | 0.0 | 1.0 |
| CKDKPBIN_6 | 1.0 | 0.0 | 1.0 |
| CKDKPBIN_7 | 1.0 | 0.0 | 1.0 |
| CKDKPBIN_13 | 0.0 | 1.0 | 0.0 |
| CKDKPBIN_24 | 0.0 | 1.0 | 0.0 |
| CKDKPBIN_35 | 0.0 | 1.0 | 0.0 |
| CKDKPBIN_46 | 0.0 | 1.0 | 0.0 |
| CKDKPBIN_57 | 0.0 | 1.0 | 0.0 |
| CKDKPBIN_68 | 0.0 | 1.0 | 0.0 |
| CKDKPBIN_79 | 0.0 | 1.0 | 0.0 |
| CKDKPBIN_87 | 0.0 | 1.0 | 0.0 |
| CKDKPBIN_88 | 0.0 | 1.0 | 0.0 |
| CKDKPBIN_89 | 0.0 | 1.0 | 0.0 |
| CKDKPBIN_90 | 0.0 | 1.0 | 0.0 |
| CKDKPBIN_91 | 0.0 | 1.0 | 0.0 |
| CKDKPBIN_92 | 0.0 | 1.0 | 0.0 |
| CKDKPBIN_93 | 0.0 | 1.0 | 0.0 |
| CKDKPBIN_94 | 0.0 | 1.0 | 0.0 |
| CKDKPBIN_95 | 0.0 | 1.0 | 0.0 |
| CKDKPBIN_96 | 0.0 | 1.0 | 0.0 |
| CKDKPBIN_97 | 0.0 | 1.0 | 0.0 |
| CKDKPBIN_98 | 0.0 | 1.0 | 0.0 |
| CKDKPBIN_99 | 0.0 | 1.0 | 0.0 |
| CKDKPBIN_100 | 0.0 | 1.0 | 0.0 |
| CKDKPBIN_101 | 0.0 | 1.0 | 0.0 |
| CKDKPBIN_102 | 0.0 | 1.0 | 0.0 |
| CKDKPBIN_103 | 0.0 | 1.0 | 0.0 |
| CKDKPBIN_104 | 0.0 | 1.0 | 0.0 |
| CKDKPBIN_105 | 0.0 | 1.0 | 0.0 |
| CKDKPBIN_106 | 0.0 | 1.0 | 0.0 |
| CKDKPBIN_107 | 0.0 | 1.0 | 0.0 |
| CKDKPBIN_108 | 0.0 | 1.0 | 0.0 |
| CKDKPBIN_109 | 0.0 | 1.0 | 0.0 |
| CKDKPBIN_110 | 1.0 | 0.0 | 1.0 |
| CKDKPBIN_111 | 0.0 | 1.0 | 0.0 |
| CKDKPBIN_112 | 0.0 | 1.0 | 0.0 |
| CKDKPBIN_113 | 0.0 | 1.0 | 0.0 |
| CKDKPBIN_114 | 0.0 | 1.0 | 0.0 |
| CKDKPBIN_115 | 0.0 | 1.0 | 0.0 |
| CKDKPBIN_116 | 0.0 | 1.0 | 0.0 |
| CKDKPBIN_117 | 0.0 | 1.0 | 0.0 |
| CKDKPBIN_118 | 1.0 | 0.0 | 1.0 |
| CKDKPBIN_119 | 0.0 | 1.0 | 0.0 |
| CKDKPBIN_120 | 0.0 | 1.0 | 0.0 |
| CKDKPBIN_121 | 0.0 | 1.0 | 0.0 |
| CKDKPBIN_122 | 0.0 | 1.0 | 0.0 |
| CKDKPBIN_123 | 0.0 | 1.0 | 0.0 |
| CKDKPBIN_124 | 0.0 | 1.0 | 0.0 |
| CKDKPBIN_125 | 0.0 | 1.0 | 0.0 |
| CKDKPBIN_126 | 0.0 | 1.0 | 0.0 |
| CKDKPBIN_127 | 0.0 | 1.0 | 0.0 |
| CKDKPBIN_128 | 0.0 | 1.0 | 0.0 |
| CKDKPBIN_129 | 0.0 | 1.0 | 0.0 |
| CKDKPBIN_130 | 0.0 | 1.0 | 0.0 |
| CKDKPBIN_131 | 0.0 | 1.0 | 0.0 |
| CKDKPBIN_132 | 0.0 | 1.0 | 0.0 |
| CKDKPBIN_133 | 0.0 | 1.0 | 0.0 |
| CKDKPBIN_134 | 0.0 | 1.0 | 0.0 |
| CKDKPBIN_135 | 0.0 | 1.0 | 0.0 |
| CKDKPBIN_136 | 0.0 | 1.0 | 0.0 |
| CKDKPBIN_137 | 0.0 | 1.0 | 0.0 |
| CKDKPBIN_138 | 0.0 | 1.0 | 0.0 |
| CKDKPBIN_139 | 0.0 | 1.0 | 0.0 |
| CKDKPBIN_140 | 0.0 | 1.0 | 0.0 |
| CKDKPBIN_141 | 0.0 | 1.0 | 0.0 |
| CKDKPBIN_142 | 1.0 | 0.0 | 1.0 |
| CKDKPBIN_143 | 1.0 | 0.0 | 1.0 |
| CKDKPBIN_144 | 0.0 | 1.0 | 0.0 |
| CKDKPBIN_145 | 0.0 | 1.0 | 0.0 |
| CKDKPBIN_146 | 0.0 | 1.0 | 0.0 |
| CKDKPBIN_147 | 0.0 | 1.0 | 0.0 |
| CKDKPBIN_148 | 1.0 | 0.0 | 1.0 |
| CKDKPBIN_149 | 0.0 | 1.0 | 0.0 |
| CKDKPBIN_150 | 0.0 | 1.0 | 0.0 |
| CKDKPBIN_151 | 0.0 | 1.0 | 0.0 |
| CKDKPBIN_152 | 0.0 | 1.0 | 0.0 |
| CKDKPBIN_153 | 0.0 | 1.0 | 0.0 |
| CKDKPBIN_154 | 0.0 | 1.0 | 0.0 |
| CKDKPBIN_155 | 0.0 | 1.0 | 0.0 |
| CKDKPBIN_156 | 0.0 | 1.0 | 0.0 |
| CKDKPBIN_157 | 1.0 | 0.0 | 1.0 |
| CKDKPBIN_158 | 0.0 | 1.0 | 0.0 |
| CKDKPBIN_159 | 1.0 | 0.0 | 1.0 |
| CKDKPBIN_160 | 1.0 | 0.0 | 1.0 |
| CKDKPBIN_161 | 0.0 | 1.0 | 0.0 |
| CKDKPBIN_162 | 1.0 | 0.0 | 1.0 |
| CKDKPBIN_163 | 1.0 | 0.0 | 1.0 |
| CKDKPBIN_164 | 0.0 | 1.0 | 0.0 |
| CKDKPBIN_166 | 0.0 | 1.0 | 0.0 |
| CKDKPBIN_167 | 1.0 | 0.0 | 1.0 |
| CKDKPBIN_168 | 0.0 | 1.0 | 0.0 |
| CKDKPBIN_169 | 1.0 | 0.0 | 1.0 |
| CKDKPBIN_170 | 1.0 | 0.0 | 1.0 |
| CKDKPBIN_171 | 0.0 | 1.0 | 0.0 |
| CKDKPBIN_172 | 0.0 | 1.0 | 0.0 |
| CKDKPBIN_173 | 0.0 | 1.0 | 0.0 |
| CKDKPBIN_174 | 1.0 | 0.0 | 1.0 |
| CKDKPBIN_175 | 0.0 | 1.0 | 0.0 |
| CKDKPBIN_176 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| CKDKPBIN_133 | 175899 | 186773 | False | Siphoviridae | VOG0749, |
| CKDKPBIN_166 | 140998 | 143643 | False | Myoviridae | VOG1931, |
Phigaro v2.4.0 (Database: Jan. 2024 release)