Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 4 | 0 | 1 | 4.12 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| BGFHAKFO_2 | 150911 | 152836 | tet(Q) | ARO:3000191 | tet(Q) | 96.41 | 97.56 | Z21523.1 |
| BGFHAKFO_221 | 109585 | 110322 | ErmB | ARO:3000375 | ErmB | 97.96 | 98.79 | AF242872.1 |
| BGFHAKFO_230 | 354 | 1559 | Mef(En2) | ARO:3004659 | Mef(En2) | 99.50 | 100.00 | AF251288.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| BGFHAKFO_2 | 150911 | 152836 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 99.84 | 100.00 | L33696 |
| BGFHAKFO_221 | 109585 | 110322 | erm(B) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.73 | 100.00 | U18931 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| BGFHAKFO_230 | 1584 | 2093 | lnu(AN2) | lincosamide nucleotidyltransferase Lnu(AN2) | EXACTX | 100.00 | 100.00 | WP_004308783.1 |
| BGFHAKFO_2 | 150911 | 152833 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 99.53 | 100.00 | WP_063856407.1 |
| BGFHAKFO_230 | 354 | 1556 | mef(En2) | macrolide efflux MFS transporter Mef(En2) | BLASTX | 99.50 | 100.00 | WP_063853729.1 |
| BGFHAKFO_221 | 109585 | 110319 | erm(B) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(B) | BLASTX | 99.18 | 100.00 | WP_002292226.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| BGFHAKFO_204 | 1928 | 348 | GroEL | 0.0 | folding of newly synthesized proteins, preventing misfolding and aggregation | 80.64 | 96.70 | BAA04222 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| BGFHAKFO_264 | 312 | 991 | repUS2 | 682 / 681 | 98.53 | BFU30316 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| BGFHAKFO_1 | 0.0 | 1.0 | 0.0 |
| BGFHAKFO_2 | 0.0 | 1.0 | 0.0 |
| BGFHAKFO_3 | 1.0 | 0.0 | 1.0 |
| BGFHAKFO_4 | 1.0 | 0.0 | 1.0 |
| BGFHAKFO_5 | 1.0 | 0.0 | 1.0 |
| BGFHAKFO_6 | 1.0 | 0.0 | 1.0 |
| BGFHAKFO_7 | 1.0 | 0.0 | 1.0 |
| BGFHAKFO_13 | 0.0 | 1.0 | 0.0 |
| BGFHAKFO_24 | 0.0 | 1.0 | 0.0 |
| BGFHAKFO_35 | 0.0 | 1.0 | 0.0 |
| BGFHAKFO_46 | 0.0 | 1.0 | 0.0 |
| BGFHAKFO_57 | 0.0 | 1.0 | 0.0 |
| BGFHAKFO_68 | 0.0 | 1.0 | 0.0 |
| BGFHAKFO_79 | 0.0 | 1.0 | 0.0 |
| BGFHAKFO_90 | 0.0 | 1.0 | 0.0 |
| BGFHAKFO_101 | 0.0 | 1.0 | 0.0 |
| BGFHAKFO_112 | 0.0 | 1.0 | 0.0 |
| BGFHAKFO_113 | 0.0 | 1.0 | 0.0 |
| BGFHAKFO_124 | 0.0 | 1.0 | 0.0 |
| BGFHAKFO_135 | 1.0 | 0.0 | 1.0 |
| BGFHAKFO_146 | 0.0 | 1.0 | 0.0 |
| BGFHAKFO_157 | 0.0 | 1.0 | 0.0 |
| BGFHAKFO_168 | 0.0 | 1.0 | 0.0 |
| BGFHAKFO_179 | 0.0 | 1.0 | 0.0 |
| BGFHAKFO_190 | 0.0 | 1.0 | 0.0 |
| BGFHAKFO_197 | 0.0 | 1.0 | 0.0 |
| BGFHAKFO_198 | 0.0 | 1.0 | 0.0 |
| BGFHAKFO_199 | 0.0 | 1.0 | 0.0 |
| BGFHAKFO_200 | 0.0 | 1.0 | 0.0 |
| BGFHAKFO_201 | 0.0 | 1.0 | 0.0 |
| BGFHAKFO_202 | 0.0 | 1.0 | 0.0 |
| BGFHAKFO_203 | 0.0 | 1.0 | 0.0 |
| BGFHAKFO_204 | 0.0 | 1.0 | 0.0 |
| BGFHAKFO_205 | 1.0 | 0.0 | 1.0 |
| BGFHAKFO_206 | 0.0 | 1.0 | 0.0 |
| BGFHAKFO_207 | 0.0 | 1.0 | 0.0 |
| BGFHAKFO_208 | 0.0 | 1.0 | 0.0 |
| BGFHAKFO_209 | 0.0 | 1.0 | 0.0 |
| BGFHAKFO_210 | 0.0 | 1.0 | 0.0 |
| BGFHAKFO_211 | 0.0 | 1.0 | 0.0 |
| BGFHAKFO_212 | 0.0 | 1.0 | 0.0 |
| BGFHAKFO_213 | 0.0 | 1.0 | 0.0 |
| BGFHAKFO_214 | 1.0 | 0.0 | 1.0 |
| BGFHAKFO_215 | 0.0 | 1.0 | 0.0 |
| BGFHAKFO_216 | 0.0 | 1.0 | 0.0 |
| BGFHAKFO_217 | 0.0 | 1.0 | 0.0 |
| BGFHAKFO_218 | 0.0 | 1.0 | 0.0 |
| BGFHAKFO_219 | 0.0 | 1.0 | 0.0 |
| BGFHAKFO_220 | 0.0 | 1.0 | 0.0 |
| BGFHAKFO_221 | 0.0 | 1.0 | 0.0 |
| BGFHAKFO_222 | 0.0 | 1.0 | 0.0 |
| BGFHAKFO_223 | 0.0 | 1.0 | 0.0 |
| BGFHAKFO_224 | 0.0 | 1.0 | 0.0 |
| BGFHAKFO_225 | 0.0 | 1.0 | 0.0 |
| BGFHAKFO_226 | 1.0 | 0.0 | 1.0 |
| BGFHAKFO_227 | 0.0 | 1.0 | 0.0 |
| BGFHAKFO_228 | 0.0 | 1.0 | 0.0 |
| BGFHAKFO_229 | 1.0 | 0.0 | 1.0 |
| BGFHAKFO_230 | 0.0 | 1.0 | 0.0 |
| BGFHAKFO_231 | 0.0 | 1.0 | 0.0 |
| BGFHAKFO_232 | 0.0 | 1.0 | 0.0 |
| BGFHAKFO_233 | 1.0 | 0.0 | 1.0 |
| BGFHAKFO_234 | 1.0 | 0.0 | 1.0 |
| BGFHAKFO_235 | 0.0 | 1.0 | 0.0 |
| BGFHAKFO_236 | 1.0 | 0.0 | 1.0 |
| BGFHAKFO_237 | 1.0 | 0.0 | 1.0 |
| BGFHAKFO_238 | 0.0 | 1.0 | 0.0 |
| BGFHAKFO_239 | 0.0 | 1.0 | 0.0 |
| BGFHAKFO_240 | 1.0 | 0.0 | 1.0 |
| BGFHAKFO_241 | 0.0 | 1.0 | 0.0 |
| BGFHAKFO_242 | 1.0 | 0.0 | 1.0 |
| BGFHAKFO_243 | 0.0 | 1.0 | 0.0 |
| BGFHAKFO_244 | 1.0 | 0.0 | 1.0 |
| BGFHAKFO_245 | 1.0 | 0.0 | 1.0 |
| BGFHAKFO_246 | 1.0 | 0.0 | 1.0 |
| BGFHAKFO_247 | 0.0 | 1.0 | 0.0 |
| BGFHAKFO_248 | 1.0 | 0.0 | 1.0 |
| BGFHAKFO_250 | 1.0 | 0.0 | 1.0 |
| BGFHAKFO_251 | 1.0 | 0.0 | 1.0 |
| BGFHAKFO_252 | 1.0 | 0.0 | 1.0 |
| BGFHAKFO_253 | 0.0 | 1.0 | 0.0 |
| BGFHAKFO_254 | 0.0 | 1.0 | 0.0 |
| BGFHAKFO_255 | 1.0 | 0.0 | 1.0 |
| BGFHAKFO_256 | 0.0 | 1.0 | 0.0 |
| BGFHAKFO_257 | 1.0 | 0.0 | 1.0 |
| BGFHAKFO_258 | 1.0 | 0.0 | 1.0 |
| BGFHAKFO_259 | 0.0 | 1.0 | 0.0 |
| BGFHAKFO_260 | 1.0 | 0.0 | 1.0 |
| BGFHAKFO_261 | 1.0 | 0.0 | 1.0 |
| BGFHAKFO_262 | 1.0 | 0.0 | 1.0 |
| BGFHAKFO_263 | 1.0 | 0.0 | 1.0 |
| BGFHAKFO_264 | 1.0 | 0.0 | 1.0 |
| BGFHAKFO_265 | 0.0 | 1.0 | 0.0 |
| BGFHAKFO_266 | 1.0 | 0.0 | 1.0 |
| BGFHAKFO_267 | 1.0 | 0.0 | 1.0 |
| BGFHAKFO_268 | 0.0 | 1.0 | 0.0 |
| BGFHAKFO_269 | 1.0 | 0.0 | 1.0 |
| BGFHAKFO_270 | 1.0 | 0.0 | 1.0 |
| BGFHAKFO_271 | 1.0 | 0.0 | 1.0 |
| BGFHAKFO_272 | 0.0 | 1.0 | 0.0 |
| BGFHAKFO_273 | 1.0 | 0.0 | 1.0 |
| BGFHAKFO_274 | 1.0 | 0.0 | 1.0 |
| BGFHAKFO_275 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| BGFHAKFO_221 | 83504 | 87965 | True | Siphoviridae | VOG0275, |
Phigaro v2.4.0 (Database: Jan. 2024 release)