Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 4 | 0 | 0 | 4.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| BBNAHJAA_1 | 265745 | 266482 | ErmB | ARO:3000375 | ErmB | 97.96 | 98.79 | AF242872.1 |
| BBNAHJAA_47 | 46767 | 48741 | tet(Q) | ARO:3000191 | tet(Q) | 100.00 | 97.56 | Z21523.1 |
| BBNAHJAA_47 | 9956 | 10846 | CblA-1 | ARO:3002999 | CblA-1 | 100.00 | 100.00 | GQ343019.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| BBNAHJAA_47 | 46815 | 48740 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 100.00 | 100.00 | Z21523 |
| BBNAHJAA_1 | 265745 | 266482 | erm(B) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.73 | 100.00 | U18931 |
| BBNAHJAA_1 | 317021 | 317974 | cfxA3 | Ampicillin | 85.95 | 98.65 | AF472622 |
| BBNAHJAA_1 | 317021 | 317974 | cfxA4 | Unknown Beta-lactam | 85.95 | 98.65 | AY769933 |
| BBNAHJAA_1 | 317021 | 317974 | cfxA5 | Unknown Beta-lactam | 85.95 | 98.65 | AY769934 |
| BBNAHJAA_1 | 317021 | 317974 | cfxA | Cefoxitin, Ampicillin | 85.95 | 98.65 | U38243 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| BBNAHJAA_47 | 9959 | 10846 | cblA | CblA family class A beta-lactamase | EXACTX | 100.00 | 100.00 | WP_005827792.1 |
| BBNAHJAA_47 | 46815 | 48737 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | EXACTX | 100.00 | 100.00 | WP_002560998.1 |
| BBNAHJAA_1 | 265745 | 266479 | erm(B) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(B) | BLASTX | 99.18 | 100.00 | WP_002292226.1 |
| BBNAHJAA_1 | 317020 | 317970 | cfxA | CfxA family broad-spectrum class A beta-lactamase | BLASTX | 83.60 | 98.75 | WP_004339683.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| BBNAHJAA_98 | 312 | 991 | repUS2 | 682 / 681 | 99.27 | BFU30316 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| BBNAHJAA_1 | 0.0 | 1.0 | 0.0 |
| BBNAHJAA_2 | 0.0 | 1.0 | 0.0 |
| BBNAHJAA_13 | 0.0 | 1.0 | 0.0 |
| BBNAHJAA_24 | 0.0 | 1.0 | 0.0 |
| BBNAHJAA_35 | 0.0 | 1.0 | 0.0 |
| BBNAHJAA_38 | 0.0 | 1.0 | 0.0 |
| BBNAHJAA_39 | 0.0 | 1.0 | 0.0 |
| BBNAHJAA_40 | 0.0 | 1.0 | 0.0 |
| BBNAHJAA_41 | 0.0 | 1.0 | 0.0 |
| BBNAHJAA_42 | 0.0 | 1.0 | 0.0 |
| BBNAHJAA_43 | 0.0 | 1.0 | 0.0 |
| BBNAHJAA_44 | 0.0 | 1.0 | 0.0 |
| BBNAHJAA_45 | 0.0 | 1.0 | 0.0 |
| BBNAHJAA_46 | 0.0 | 1.0 | 0.0 |
| BBNAHJAA_47 | 0.0 | 1.0 | 0.0 |
| BBNAHJAA_48 | 0.0 | 1.0 | 0.0 |
| BBNAHJAA_49 | 1.0 | 0.0 | 1.0 |
| BBNAHJAA_50 | 1.0 | 0.0 | 1.0 |
| BBNAHJAA_51 | 0.0 | 1.0 | 0.0 |
| BBNAHJAA_52 | 0.0 | 1.0 | 0.0 |
| BBNAHJAA_53 | 0.0 | 1.0 | 0.0 |
| BBNAHJAA_54 | 0.0 | 1.0 | 0.0 |
| BBNAHJAA_55 | 0.0 | 1.0 | 0.0 |
| BBNAHJAA_56 | 1.0 | 0.0 | 1.0 |
| BBNAHJAA_57 | 0.0 | 1.0 | 0.0 |
| BBNAHJAA_58 | 1.0 | 0.0 | 1.0 |
| BBNAHJAA_59 | 0.0 | 1.0 | 0.0 |
| BBNAHJAA_60 | 0.0 | 1.0 | 0.0 |
| BBNAHJAA_61 | 0.0 | 1.0 | 0.0 |
| BBNAHJAA_62 | 1.0 | 0.0 | 1.0 |
| BBNAHJAA_63 | 0.0 | 1.0 | 0.0 |
| BBNAHJAA_64 | 0.0 | 1.0 | 0.0 |
| BBNAHJAA_65 | 0.0 | 1.0 | 0.0 |
| BBNAHJAA_66 | 0.0 | 1.0 | 0.0 |
| BBNAHJAA_67 | 1.0 | 0.0 | 1.0 |
| BBNAHJAA_68 | 1.0 | 0.0 | 1.0 |
| BBNAHJAA_70 | 1.0 | 0.0 | 1.0 |
| BBNAHJAA_71 | 1.0 | 0.0 | 1.0 |
| BBNAHJAA_72 | 1.0 | 0.0 | 1.0 |
| BBNAHJAA_73 | 1.0 | 0.0 | 1.0 |
| BBNAHJAA_74 | 1.0 | 0.0 | 1.0 |
| BBNAHJAA_75 | 0.0 | 1.0 | 0.0 |
| BBNAHJAA_76 | 1.0 | 0.0 | 1.0 |
| BBNAHJAA_77 | 0.0 | 1.0 | 0.0 |
| BBNAHJAA_78 | 1.0 | 0.0 | 1.0 |
| BBNAHJAA_79 | 1.0 | 0.0 | 1.0 |
| BBNAHJAA_80 | 1.0 | 0.0 | 1.0 |
| BBNAHJAA_81 | 1.0 | 0.0 | 1.0 |
| BBNAHJAA_82 | 0.0 | 1.0 | 0.0 |
| BBNAHJAA_83 | 1.0 | 0.0 | 1.0 |
| BBNAHJAA_84 | 1.0 | 0.0 | 1.0 |
| BBNAHJAA_85 | 1.0 | 0.0 | 1.0 |
| BBNAHJAA_86 | 1.0 | 0.0 | 1.0 |
| BBNAHJAA_87 | 1.0 | 0.0 | 1.0 |
| BBNAHJAA_88 | 0.0 | 1.0 | 0.0 |
| BBNAHJAA_89 | 0.0 | 1.0 | 0.0 |
| BBNAHJAA_90 | 1.0 | 0.0 | 1.0 |
| BBNAHJAA_92 | 1.0 | 0.0 | 1.0 |
| BBNAHJAA_93 | 1.0 | 0.0 | 1.0 |
| BBNAHJAA_94 | 1.0 | 0.0 | 1.0 |
| BBNAHJAA_95 | 1.0 | 0.0 | 1.0 |
| BBNAHJAA_96 | 1.0 | 0.0 | 1.0 |
| BBNAHJAA_97 | 1.0 | 0.0 | 1.0 |
| BBNAHJAA_98 | 1.0 | 0.0 | 1.0 |
| BBNAHJAA_99 | 0.0 | 1.0 | 0.0 |
| BBNAHJAA_100 | 1.0 | 0.0 | 1.0 |
| BBNAHJAA_110 | 0.0 | 1.0 | 0.0 |
| BBNAHJAA_121 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| BBNAHJAA_1 | 240368 | 244989 | True | Siphoviridae | VOG0275, |
| BBNAHJAA_13 | 23028 | 34794 | False | Unknown | VOG4690, |
| BBNAHJAA_13 | 119662 | 132798 | False | Unknown | VOG3992, |
| BBNAHJAA_54 | 1614 | 12320 | False | Siphoviridae | VOG0749, |
| BBNAHJAA_55 | 29236 | 39947 | False | Unknown | VOG0083, |
| BBNAHJAA_99 | 41529 | 49279 | False | Siphoviridae | VOG4544, |
Phigaro v2.4.0 (Database: Jan. 2024 release)