Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 2 | 0 | 1 | 2.24 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| ALMAMOCF_232 | 115411 | 116376 | CfxA3 | ARO:3003003 | CfxA3 | 100.00 | 100.00 | AF472622.2 |
| ALMAMOCF_90 | 16039 | 17964 | tet(Q) | ARO:3000191 | tet(Q) | 97.04 | 97.56 | Z21523.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| ALMAMOCF_232 | 115411 | 116376 | cfxA3 | Ampicillin | 100.00 | 100.00 | AF472622 |
| ALMAMOCF_90 | 16039 | 17964 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 100.00 | 100.00 | X58717 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| ALMAMOCF_232 | 115411 | 116373 | cfxA3 | extended-spectrum class A beta-lactamase CfxA3 | EXACTX | 100.00 | 100.00 | WP_004348227.1 |
| ALMAMOCF_90 | 16042 | 17964 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | EXACTX | 100.00 | 100.00 | WP_004293868.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| ALMAMOCF_243 | 70207 | 71787 | GroEL | 0.0 | folding of newly synthesized proteins, preventing misfolding and aggregation | 86.91 | 96.70 | BAA04222 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| ALMAMOCF_1 | 0.0 | 1.0 | 0.0 |
| ALMAMOCF_2 | 0.0 | 1.0 | 0.0 |
| ALMAMOCF_13 | 0.0 | 1.0 | 0.0 |
| ALMAMOCF_24 | 0.0 | 1.0 | 0.0 |
| ALMAMOCF_35 | 0.0 | 1.0 | 0.0 |
| ALMAMOCF_46 | 0.0 | 1.0 | 0.0 |
| ALMAMOCF_57 | 0.0 | 1.0 | 0.0 |
| ALMAMOCF_68 | 0.0 | 1.0 | 0.0 |
| ALMAMOCF_79 | 0.0 | 1.0 | 0.0 |
| ALMAMOCF_90 | 0.0 | 1.0 | 0.0 |
| ALMAMOCF_101 | 0.0 | 1.0 | 0.0 |
| ALMAMOCF_112 | 0.0 | 1.0 | 0.0 |
| ALMAMOCF_113 | 0.0 | 1.0 | 0.0 |
| ALMAMOCF_124 | 0.0 | 1.0 | 0.0 |
| ALMAMOCF_135 | 0.0 | 1.0 | 0.0 |
| ALMAMOCF_146 | 0.0 | 1.0 | 0.0 |
| ALMAMOCF_157 | 0.0 | 1.0 | 0.0 |
| ALMAMOCF_168 | 0.0 | 1.0 | 0.0 |
| ALMAMOCF_179 | 0.0 | 1.0 | 0.0 |
| ALMAMOCF_190 | 0.0 | 1.0 | 0.0 |
| ALMAMOCF_197 | 1.0 | 0.0 | 1.0 |
| ALMAMOCF_198 | 0.0 | 1.0 | 0.0 |
| ALMAMOCF_199 | 0.0 | 1.0 | 0.0 |
| ALMAMOCF_200 | 0.0 | 1.0 | 0.0 |
| ALMAMOCF_201 | 0.0 | 1.0 | 0.0 |
| ALMAMOCF_202 | 0.0 | 1.0 | 0.0 |
| ALMAMOCF_203 | 0.0 | 1.0 | 0.0 |
| ALMAMOCF_204 | 0.0 | 1.0 | 0.0 |
| ALMAMOCF_205 | 0.0 | 1.0 | 0.0 |
| ALMAMOCF_206 | 0.0 | 1.0 | 0.0 |
| ALMAMOCF_207 | 0.0 | 1.0 | 0.0 |
| ALMAMOCF_208 | 0.0 | 1.0 | 0.0 |
| ALMAMOCF_209 | 0.0 | 1.0 | 0.0 |
| ALMAMOCF_210 | 0.0 | 1.0 | 0.0 |
| ALMAMOCF_211 | 0.0 | 1.0 | 0.0 |
| ALMAMOCF_212 | 1.0 | 0.0 | 1.0 |
| ALMAMOCF_213 | 0.0 | 1.0 | 0.0 |
| ALMAMOCF_214 | 0.0 | 1.0 | 0.0 |
| ALMAMOCF_215 | 0.0 | 1.0 | 0.0 |
| ALMAMOCF_216 | 0.0 | 1.0 | 0.0 |
| ALMAMOCF_217 | 0.0 | 1.0 | 0.0 |
| ALMAMOCF_218 | 0.0 | 1.0 | 0.0 |
| ALMAMOCF_219 | 1.0 | 0.0 | 1.0 |
| ALMAMOCF_220 | 1.0 | 0.0 | 1.0 |
| ALMAMOCF_221 | 0.0 | 1.0 | 0.0 |
| ALMAMOCF_222 | 0.0 | 1.0 | 0.0 |
| ALMAMOCF_223 | 1.0 | 0.0 | 1.0 |
| ALMAMOCF_224 | 0.0 | 1.0 | 0.0 |
| ALMAMOCF_225 | 0.0 | 1.0 | 0.0 |
| ALMAMOCF_226 | 0.0 | 1.0 | 0.0 |
| ALMAMOCF_227 | 1.0 | 0.0 | 1.0 |
| ALMAMOCF_228 | 0.0 | 1.0 | 0.0 |
| ALMAMOCF_229 | 0.0 | 1.0 | 0.0 |
| ALMAMOCF_230 | 0.0 | 1.0 | 0.0 |
| ALMAMOCF_231 | 0.0 | 1.0 | 0.0 |
| ALMAMOCF_232 | 0.0 | 1.0 | 0.0 |
| ALMAMOCF_233 | 1.0 | 0.0 | 1.0 |
| ALMAMOCF_234 | 1.0 | 0.0 | 1.0 |
| ALMAMOCF_236 | 1.0 | 0.0 | 1.0 |
| ALMAMOCF_237 | 1.0 | 0.0 | 1.0 |
| ALMAMOCF_238 | 0.0 | 1.0 | 0.0 |
| ALMAMOCF_239 | 1.0 | 0.0 | 1.0 |
| ALMAMOCF_240 | 1.0 | 0.0 | 1.0 |
| ALMAMOCF_242 | 1.0 | 0.0 | 1.0 |
| ALMAMOCF_243 | 0.0 | 1.0 | 0.0 |
| ALMAMOCF_244 | 1.0 | 0.0 | 1.0 |
| ALMAMOCF_245 | 1.0 | 0.0 | 1.0 |
| ALMAMOCF_246 | 1.0 | 0.0 | 1.0 |
| ALMAMOCF_254 | 0.0 | 1.0 | 0.0 |
| ALMAMOCF_265 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| ALMAMOCF_254 | 36453 | 46559 | False | Siphoviridae | VOG7238, |
Phigaro v2.4.0 (Database: Jan. 2024 release)