Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 2 | 0 | 1 | 2.24 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| MDIJIGCK_11 | 111662 | 112627 | CfxA3 | ARO:3003003 | CfxA3 | 100.00 | 100.00 | AF472622.2 |
| MDIJIGCK_9 | 16039 | 17964 | tet(Q) | ARO:3000191 | tet(Q) | 97.04 | 97.56 | Z21523.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| MDIJIGCK_11 | 111662 | 112627 | cfxA3 | Ampicillin | 100.00 | 100.00 | AF472622 |
| MDIJIGCK_9 | 16039 | 17964 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 100.00 | 100.00 | X58717 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| MDIJIGCK_11 | 111665 | 112627 | cfxA3 | extended-spectrum class A beta-lactamase CfxA3 | EXACTX | 100.00 | 100.00 | WP_004348227.1 |
| MDIJIGCK_9 | 16042 | 17964 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | EXACTX | 100.00 | 100.00 | WP_004293868.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| MDIJIGCK_87 | 70314 | 71894 | GroEL | 0.0 | folding of newly synthesized proteins, preventing misfolding and aggregation | 86.91 | 96.70 | BAA04222 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| MDIJIGCK_1 | 0.0 | 1.0 | 0.0 |
| MDIJIGCK_2 | 0.0 | 1.0 | 0.0 |
| MDIJIGCK_4 | 0.0 | 1.0 | 0.0 |
| MDIJIGCK_5 | 0.0 | 1.0 | 0.0 |
| MDIJIGCK_6 | 0.0 | 1.0 | 0.0 |
| MDIJIGCK_7 | 0.0 | 1.0 | 0.0 |
| MDIJIGCK_8 | 0.0 | 1.0 | 0.0 |
| MDIJIGCK_9 | 0.0 | 1.0 | 0.0 |
| MDIJIGCK_10 | 0.0 | 1.0 | 0.0 |
| MDIJIGCK_11 | 0.0 | 1.0 | 0.0 |
| MDIJIGCK_12 | 0.0 | 1.0 | 0.0 |
| MDIJIGCK_13 | 0.0 | 1.0 | 0.0 |
| MDIJIGCK_14 | 0.0 | 1.0 | 0.0 |
| MDIJIGCK_15 | 0.0 | 1.0 | 0.0 |
| MDIJIGCK_16 | 1.0 | 0.0 | 1.0 |
| MDIJIGCK_17 | 0.0 | 1.0 | 0.0 |
| MDIJIGCK_18 | 0.0 | 1.0 | 0.0 |
| MDIJIGCK_19 | 0.0 | 1.0 | 0.0 |
| MDIJIGCK_20 | 0.0 | 1.0 | 0.0 |
| MDIJIGCK_21 | 0.0 | 1.0 | 0.0 |
| MDIJIGCK_22 | 0.0 | 1.0 | 0.0 |
| MDIJIGCK_23 | 0.0 | 1.0 | 0.0 |
| MDIJIGCK_24 | 0.0 | 1.0 | 0.0 |
| MDIJIGCK_25 | 0.0 | 1.0 | 0.0 |
| MDIJIGCK_26 | 0.0 | 1.0 | 0.0 |
| MDIJIGCK_27 | 0.0 | 1.0 | 0.0 |
| MDIJIGCK_28 | 0.0 | 1.0 | 0.0 |
| MDIJIGCK_29 | 0.0 | 1.0 | 0.0 |
| MDIJIGCK_30 | 0.0 | 1.0 | 0.0 |
| MDIJIGCK_31 | 0.0 | 1.0 | 0.0 |
| MDIJIGCK_32 | 0.0 | 1.0 | 0.0 |
| MDIJIGCK_33 | 0.0 | 1.0 | 0.0 |
| MDIJIGCK_34 | 1.0 | 0.0 | 1.0 |
| MDIJIGCK_35 | 0.0 | 1.0 | 0.0 |
| MDIJIGCK_36 | 0.0 | 1.0 | 0.0 |
| MDIJIGCK_37 | 1.0 | 0.0 | 1.0 |
| MDIJIGCK_38 | 1.0 | 0.0 | 1.0 |
| MDIJIGCK_39 | 0.0 | 1.0 | 0.0 |
| MDIJIGCK_40 | 1.0 | 0.0 | 1.0 |
| MDIJIGCK_41 | 1.0 | 0.0 | 1.0 |
| MDIJIGCK_42 | 0.0 | 1.0 | 0.0 |
| MDIJIGCK_43 | 0.0 | 1.0 | 0.0 |
| MDIJIGCK_44 | 1.0 | 0.0 | 1.0 |
| MDIJIGCK_45 | 0.0 | 1.0 | 0.0 |
| MDIJIGCK_46 | 0.0 | 1.0 | 0.0 |
| MDIJIGCK_47 | 1.0 | 0.0 | 1.0 |
| MDIJIGCK_48 | 1.0 | 0.0 | 1.0 |
| MDIJIGCK_50 | 1.0 | 0.0 | 1.0 |
| MDIJIGCK_51 | 1.0 | 0.0 | 1.0 |
| MDIJIGCK_52 | 1.0 | 0.0 | 1.0 |
| MDIJIGCK_54 | 1.0 | 0.0 | 1.0 |
| MDIJIGCK_55 | 1.0 | 0.0 | 1.0 |
| MDIJIGCK_56 | 1.0 | 0.0 | 1.0 |
| MDIJIGCK_57 | 0.0 | 1.0 | 0.0 |
| MDIJIGCK_68 | 0.0 | 1.0 | 0.0 |
| MDIJIGCK_79 | 0.0 | 1.0 | 0.0 |
| MDIJIGCK_87 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| MDIJIGCK_68 | 100552 | 101208 | False | Siphoviridae | VOG2703 |
| MDIJIGCK_79 | 36446 | 46552 | False | Siphoviridae | VOG7238, |
Phigaro v2.4.0 (Database: Jan. 2024 release)