Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 2 | 0 | 1 | 2.24 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| MADGEGCM_31 | 111662 | 112627 | CfxA3 | ARO:3003003 | CfxA3 | 100.00 | 100.00 | AF472622.2 |
| MADGEGCM_28 | 16039 | 17964 | tet(Q) | ARO:3000191 | tet(Q) | 97.04 | 97.56 | Z21523.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| MADGEGCM_31 | 111662 | 112627 | cfxA3 | Ampicillin | 100.00 | 100.00 | AF472622 |
| MADGEGCM_28 | 16039 | 17964 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 100.00 | 100.00 | X58717 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| MADGEGCM_31 | 111665 | 112627 | cfxA3 | extended-spectrum class A beta-lactamase CfxA3 | EXACTX | 100.00 | 100.00 | WP_004348227.1 |
| MADGEGCM_28 | 16042 | 17964 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | EXACTX | 100.00 | 100.00 | WP_004293868.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| MADGEGCM_101 | 125479 | 123899 | GroEL | 0.0 | folding of newly synthesized proteins, preventing misfolding and aggregation | 86.91 | 96.70 | BAA04222 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| MADGEGCM_1 | 0.0 | 1.0 | 0.0 |
| MADGEGCM_2 | 0.0 | 1.0 | 0.0 |
| MADGEGCM_12 | 0.0 | 1.0 | 0.0 |
| MADGEGCM_19 | 0.0 | 1.0 | 0.0 |
| MADGEGCM_24 | 0.0 | 1.0 | 0.0 |
| MADGEGCM_25 | 0.0 | 1.0 | 0.0 |
| MADGEGCM_26 | 0.0 | 1.0 | 0.0 |
| MADGEGCM_27 | 0.0 | 1.0 | 0.0 |
| MADGEGCM_28 | 0.0 | 1.0 | 0.0 |
| MADGEGCM_29 | 0.0 | 1.0 | 0.0 |
| MADGEGCM_30 | 0.0 | 1.0 | 0.0 |
| MADGEGCM_31 | 0.0 | 1.0 | 0.0 |
| MADGEGCM_32 | 0.0 | 1.0 | 0.0 |
| MADGEGCM_33 | 0.0 | 1.0 | 0.0 |
| MADGEGCM_34 | 1.0 | 0.0 | 1.0 |
| MADGEGCM_35 | 0.0 | 1.0 | 0.0 |
| MADGEGCM_36 | 0.0 | 1.0 | 0.0 |
| MADGEGCM_37 | 0.0 | 1.0 | 0.0 |
| MADGEGCM_38 | 0.0 | 1.0 | 0.0 |
| MADGEGCM_39 | 0.0 | 1.0 | 0.0 |
| MADGEGCM_40 | 0.0 | 1.0 | 0.0 |
| MADGEGCM_41 | 0.0 | 1.0 | 0.0 |
| MADGEGCM_42 | 0.0 | 1.0 | 0.0 |
| MADGEGCM_43 | 0.0 | 1.0 | 0.0 |
| MADGEGCM_44 | 0.0 | 1.0 | 0.0 |
| MADGEGCM_45 | 0.0 | 1.0 | 0.0 |
| MADGEGCM_46 | 0.0 | 1.0 | 0.0 |
| MADGEGCM_47 | 0.0 | 1.0 | 0.0 |
| MADGEGCM_48 | 0.0 | 1.0 | 0.0 |
| MADGEGCM_49 | 0.0 | 1.0 | 0.0 |
| MADGEGCM_50 | 0.0 | 1.0 | 0.0 |
| MADGEGCM_51 | 1.0 | 0.0 | 1.0 |
| MADGEGCM_52 | 0.0 | 1.0 | 0.0 |
| MADGEGCM_53 | 0.0 | 1.0 | 0.0 |
| MADGEGCM_54 | 1.0 | 0.0 | 1.0 |
| MADGEGCM_55 | 1.0 | 0.0 | 1.0 |
| MADGEGCM_56 | 0.0 | 1.0 | 0.0 |
| MADGEGCM_57 | 1.0 | 0.0 | 1.0 |
| MADGEGCM_58 | 0.0 | 1.0 | 0.0 |
| MADGEGCM_59 | 1.0 | 0.0 | 1.0 |
| MADGEGCM_60 | 0.0 | 1.0 | 0.0 |
| MADGEGCM_61 | 0.0 | 1.0 | 0.0 |
| MADGEGCM_62 | 1.0 | 0.0 | 1.0 |
| MADGEGCM_64 | 0.0 | 1.0 | 0.0 |
| MADGEGCM_65 | 0.0 | 1.0 | 0.0 |
| MADGEGCM_66 | 1.0 | 0.0 | 1.0 |
| MADGEGCM_67 | 1.0 | 0.0 | 1.0 |
| MADGEGCM_69 | 1.0 | 0.0 | 1.0 |
| MADGEGCM_70 | 1.0 | 0.0 | 1.0 |
| MADGEGCM_71 | 1.0 | 0.0 | 1.0 |
| MADGEGCM_73 | 1.0 | 0.0 | 1.0 |
| MADGEGCM_74 | 1.0 | 0.0 | 1.0 |
| MADGEGCM_75 | 0.0 | 1.0 | 0.0 |
| MADGEGCM_76 | 1.0 | 0.0 | 1.0 |
| MADGEGCM_85 | 0.0 | 1.0 | 0.0 |
| MADGEGCM_93 | 0.0 | 1.0 | 0.0 |
| MADGEGCM_101 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| MADGEGCM_31 | 214756 | 215412 | False | Siphoviridae | VOG2703 |
| MADGEGCM_93 | 158417 | 168523 | False | Siphoviridae | VOG3691, |
Phigaro v2.4.0 (Database: Jan. 2024 release)