Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 2 | 0 | 1 | 2.24 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| IEBEDBAB_110 | 111662 | 112627 | CfxA3 | ARO:3003003 | CfxA3 | 100.00 | 100.00 | AF472622.2 |
| IEBEDBAB_79 | 101513 | 103438 | tet(Q) | ARO:3000191 | tet(Q) | 97.04 | 97.56 | Z21523.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| IEBEDBAB_110 | 111662 | 112627 | cfxA3 | Ampicillin | 100.00 | 100.00 | AF472622 |
| IEBEDBAB_79 | 101513 | 103438 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 100.00 | 100.00 | X58717 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| IEBEDBAB_110 | 111665 | 112627 | cfxA3 | extended-spectrum class A beta-lactamase CfxA3 | EXACTX | 100.00 | 100.00 | WP_004348227.1 |
| IEBEDBAB_79 | 101513 | 103435 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | EXACTX | 100.00 | 100.00 | WP_004293868.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| IEBEDBAB_177 | 70315 | 71895 | GroEL | 0.0 | folding of newly synthesized proteins, preventing misfolding and aggregation | 86.91 | 96.70 | BAA04222 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| IEBEDBAB_1 | 0.0 | 1.0 | 0.0 |
| IEBEDBAB_2 | 0.0 | 1.0 | 0.0 |
| IEBEDBAB_13 | 0.0 | 1.0 | 0.0 |
| IEBEDBAB_24 | 0.0 | 1.0 | 0.0 |
| IEBEDBAB_35 | 0.0 | 1.0 | 0.0 |
| IEBEDBAB_46 | 0.0 | 1.0 | 0.0 |
| IEBEDBAB_57 | 0.0 | 1.0 | 0.0 |
| IEBEDBAB_68 | 0.0 | 1.0 | 0.0 |
| IEBEDBAB_79 | 0.0 | 1.0 | 0.0 |
| IEBEDBAB_90 | 0.0 | 1.0 | 0.0 |
| IEBEDBAB_100 | 0.0 | 1.0 | 0.0 |
| IEBEDBAB_110 | 0.0 | 1.0 | 0.0 |
| IEBEDBAB_111 | 0.0 | 1.0 | 0.0 |
| IEBEDBAB_122 | 0.0 | 1.0 | 0.0 |
| IEBEDBAB_125 | 0.0 | 1.0 | 0.0 |
| IEBEDBAB_126 | 0.0 | 1.0 | 0.0 |
| IEBEDBAB_127 | 0.0 | 1.0 | 0.0 |
| IEBEDBAB_128 | 0.0 | 1.0 | 0.0 |
| IEBEDBAB_129 | 1.0 | 0.0 | 1.0 |
| IEBEDBAB_130 | 0.0 | 1.0 | 0.0 |
| IEBEDBAB_131 | 0.0 | 1.0 | 0.0 |
| IEBEDBAB_132 | 0.0 | 1.0 | 0.0 |
| IEBEDBAB_133 | 0.0 | 1.0 | 0.0 |
| IEBEDBAB_134 | 0.0 | 1.0 | 0.0 |
| IEBEDBAB_135 | 0.0 | 1.0 | 0.0 |
| IEBEDBAB_136 | 0.0 | 1.0 | 0.0 |
| IEBEDBAB_137 | 0.0 | 1.0 | 0.0 |
| IEBEDBAB_138 | 0.0 | 1.0 | 0.0 |
| IEBEDBAB_139 | 0.0 | 1.0 | 0.0 |
| IEBEDBAB_140 | 0.0 | 1.0 | 0.0 |
| IEBEDBAB_141 | 0.0 | 1.0 | 0.0 |
| IEBEDBAB_142 | 0.0 | 1.0 | 0.0 |
| IEBEDBAB_143 | 1.0 | 0.0 | 1.0 |
| IEBEDBAB_144 | 0.0 | 1.0 | 0.0 |
| IEBEDBAB_145 | 0.0 | 1.0 | 0.0 |
| IEBEDBAB_146 | 0.0 | 1.0 | 0.0 |
| IEBEDBAB_147 | 1.0 | 0.0 | 1.0 |
| IEBEDBAB_148 | 0.0 | 1.0 | 0.0 |
| IEBEDBAB_149 | 1.0 | 0.0 | 1.0 |
| IEBEDBAB_150 | 0.0 | 1.0 | 0.0 |
| IEBEDBAB_151 | 0.0 | 1.0 | 0.0 |
| IEBEDBAB_152 | 0.0 | 1.0 | 0.0 |
| IEBEDBAB_153 | 0.0 | 1.0 | 0.0 |
| IEBEDBAB_154 | 1.0 | 0.0 | 1.0 |
| IEBEDBAB_155 | 0.0 | 1.0 | 0.0 |
| IEBEDBAB_156 | 0.0 | 1.0 | 0.0 |
| IEBEDBAB_157 | 0.0 | 1.0 | 0.0 |
| IEBEDBAB_158 | 0.0 | 1.0 | 0.0 |
| IEBEDBAB_159 | 1.0 | 0.0 | 1.0 |
| IEBEDBAB_160 | 1.0 | 0.0 | 1.0 |
| IEBEDBAB_161 | 1.0 | 0.0 | 1.0 |
| IEBEDBAB_163 | 1.0 | 0.0 | 1.0 |
| IEBEDBAB_164 | 1.0 | 0.0 | 1.0 |
| IEBEDBAB_165 | 1.0 | 0.0 | 1.0 |
| IEBEDBAB_166 | 0.0 | 1.0 | 0.0 |
| IEBEDBAB_168 | 0.0 | 1.0 | 0.0 |
| IEBEDBAB_169 | 1.0 | 0.0 | 1.0 |
| IEBEDBAB_170 | 1.0 | 0.0 | 1.0 |
| IEBEDBAB_171 | 1.0 | 0.0 | 1.0 |
| IEBEDBAB_177 | 0.0 | 1.0 | 0.0 |
| IEBEDBAB_188 | 0.0 | 1.0 | 0.0 |
| IEBEDBAB_199 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| IEBEDBAB_110 | 214756 | 215412 | False | Siphoviridae | VOG2703 |
| IEBEDBAB_188 | 158417 | 168523 | False | Siphoviridae | VOG3691, |
Phigaro v2.4.0 (Database: Jan. 2024 release)