Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 2 | 0 | 1 | 2.24 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| JGBGJGBG_112 | 111662 | 112627 | CfxA3 | ARO:3003003 | CfxA3 | 100.00 | 100.00 | AF472622.2 |
| JGBGJGBG_90 | 16039 | 17964 | tet(Q) | ARO:3000191 | tet(Q) | 97.04 | 97.56 | Z21523.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| JGBGJGBG_112 | 111662 | 112627 | cfxA3 | Ampicillin | 100.00 | 100.00 | AF472622 |
| JGBGJGBG_90 | 16039 | 17964 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 100.00 | 100.00 | X58717 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| JGBGJGBG_112 | 111665 | 112627 | cfxA3 | extended-spectrum class A beta-lactamase CfxA3 | EXACTX | 100.00 | 100.00 | WP_004348227.1 |
| JGBGJGBG_90 | 16042 | 17964 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | EXACTX | 100.00 | 100.00 | WP_004293868.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| JGBGJGBG_282 | 138738 | 137158 | GroEL | 0.0 | folding of newly synthesized proteins, preventing misfolding and aggregation | 86.91 | 96.70 | BAA04222 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| JGBGJGBG_1 | 0.0 | 1.0 | 0.0 |
| JGBGJGBG_2 | 0.0 | 1.0 | 0.0 |
| JGBGJGBG_13 | 0.0 | 1.0 | 0.0 |
| JGBGJGBG_24 | 0.0 | 1.0 | 0.0 |
| JGBGJGBG_35 | 0.0 | 1.0 | 0.0 |
| JGBGJGBG_46 | 0.0 | 1.0 | 0.0 |
| JGBGJGBG_57 | 0.0 | 1.0 | 0.0 |
| JGBGJGBG_68 | 0.0 | 1.0 | 0.0 |
| JGBGJGBG_79 | 0.0 | 1.0 | 0.0 |
| JGBGJGBG_90 | 0.0 | 1.0 | 0.0 |
| JGBGJGBG_101 | 0.0 | 1.0 | 0.0 |
| JGBGJGBG_112 | 0.0 | 1.0 | 0.0 |
| JGBGJGBG_113 | 0.0 | 1.0 | 0.0 |
| JGBGJGBG_124 | 0.0 | 1.0 | 0.0 |
| JGBGJGBG_135 | 0.0 | 1.0 | 0.0 |
| JGBGJGBG_146 | 0.0 | 1.0 | 0.0 |
| JGBGJGBG_157 | 0.0 | 1.0 | 0.0 |
| JGBGJGBG_168 | 0.0 | 1.0 | 0.0 |
| JGBGJGBG_179 | 1.0 | 0.0 | 1.0 |
| JGBGJGBG_189 | 0.0 | 1.0 | 0.0 |
| JGBGJGBG_200 | 0.0 | 1.0 | 0.0 |
| JGBGJGBG_211 | 0.0 | 1.0 | 0.0 |
| JGBGJGBG_222 | 0.0 | 1.0 | 0.0 |
| JGBGJGBG_223 | 0.0 | 1.0 | 0.0 |
| JGBGJGBG_234 | 0.0 | 1.0 | 0.0 |
| JGBGJGBG_241 | 0.0 | 1.0 | 0.0 |
| JGBGJGBG_242 | 0.0 | 1.0 | 0.0 |
| JGBGJGBG_243 | 0.0 | 1.0 | 0.0 |
| JGBGJGBG_244 | 0.0 | 1.0 | 0.0 |
| JGBGJGBG_245 | 0.0 | 1.0 | 0.0 |
| JGBGJGBG_246 | 0.0 | 1.0 | 0.0 |
| JGBGJGBG_247 | 0.0 | 1.0 | 0.0 |
| JGBGJGBG_248 | 1.0 | 0.0 | 1.0 |
| JGBGJGBG_249 | 0.0 | 1.0 | 0.0 |
| JGBGJGBG_250 | 0.0 | 1.0 | 0.0 |
| JGBGJGBG_251 | 1.0 | 0.0 | 1.0 |
| JGBGJGBG_252 | 0.0 | 1.0 | 0.0 |
| JGBGJGBG_253 | 1.0 | 0.0 | 1.0 |
| JGBGJGBG_254 | 0.0 | 1.0 | 0.0 |
| JGBGJGBG_255 | 0.0 | 1.0 | 0.0 |
| JGBGJGBG_256 | 0.0 | 1.0 | 0.0 |
| JGBGJGBG_257 | 1.0 | 0.0 | 1.0 |
| JGBGJGBG_258 | 0.0 | 1.0 | 0.0 |
| JGBGJGBG_259 | 0.0 | 1.0 | 0.0 |
| JGBGJGBG_260 | 0.0 | 1.0 | 0.0 |
| JGBGJGBG_261 | 1.0 | 0.0 | 1.0 |
| JGBGJGBG_262 | 0.0 | 1.0 | 0.0 |
| JGBGJGBG_263 | 1.0 | 0.0 | 1.0 |
| JGBGJGBG_264 | 1.0 | 0.0 | 1.0 |
| JGBGJGBG_265 | 1.0 | 0.0 | 1.0 |
| JGBGJGBG_267 | 1.0 | 0.0 | 1.0 |
| JGBGJGBG_268 | 0.0 | 1.0 | 0.0 |
| JGBGJGBG_269 | 1.0 | 0.0 | 1.0 |
| JGBGJGBG_271 | 0.0 | 1.0 | 0.0 |
| JGBGJGBG_272 | 1.0 | 0.0 | 1.0 |
| JGBGJGBG_273 | 1.0 | 0.0 | 1.0 |
| JGBGJGBG_274 | 1.0 | 0.0 | 1.0 |
| JGBGJGBG_282 | 0.0 | 1.0 | 0.0 |
| JGBGJGBG_293 | 0.0 | 1.0 | 0.0 |
| JGBGJGBG_304 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| JGBGJGBG_112 | 214756 | 215412 | False | Siphoviridae | VOG2703 |
| JGBGJGBG_293 | 36453 | 46559 | False | Siphoviridae | VOG7238, |
Phigaro v2.4.0 (Database: Jan. 2024 release)