Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 2 | 0 | 1 | 2.24 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| KGOBDBOM_8 | 16039 | 17964 | tet(Q) | ARO:3000191 | tet(Q) | 97.04 | 97.56 | Z21523.1 |
| KGOBDBOM_10 | 1686 | 2651 | CfxA3 | ARO:3003003 | CfxA3 | 100.00 | 100.00 | AF472622.2 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| KGOBDBOM_10 | 1686 | 2651 | cfxA3 | Ampicillin | 100.00 | 100.00 | AF472622 |
| KGOBDBOM_8 | 16039 | 17964 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 100.00 | 100.00 | X58717 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| KGOBDBOM_10 | 1686 | 2648 | cfxA3 | extended-spectrum class A beta-lactamase CfxA3 | EXACTX | 100.00 | 100.00 | WP_004348227.1 |
| KGOBDBOM_8 | 16042 | 17964 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | EXACTX | 100.00 | 100.00 | WP_004293868.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| KGOBDBOM_78 | 138738 | 137158 | GroEL | 0.0 | folding of newly synthesized proteins, preventing misfolding and aggregation | 86.91 | 96.70 | BAA04222 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| KGOBDBOM_1 | 0.0 | 1.0 | 0.0 |
| KGOBDBOM_2 | 0.0 | 1.0 | 0.0 |
| KGOBDBOM_3 | 0.0 | 1.0 | 0.0 |
| KGOBDBOM_4 | 0.0 | 1.0 | 0.0 |
| KGOBDBOM_5 | 0.0 | 1.0 | 0.0 |
| KGOBDBOM_6 | 0.0 | 1.0 | 0.0 |
| KGOBDBOM_7 | 0.0 | 1.0 | 0.0 |
| KGOBDBOM_8 | 0.0 | 1.0 | 0.0 |
| KGOBDBOM_9 | 0.0 | 1.0 | 0.0 |
| KGOBDBOM_10 | 0.0 | 1.0 | 0.0 |
| KGOBDBOM_11 | 0.0 | 1.0 | 0.0 |
| KGOBDBOM_12 | 0.0 | 1.0 | 0.0 |
| KGOBDBOM_13 | 0.0 | 1.0 | 0.0 |
| KGOBDBOM_14 | 0.0 | 1.0 | 0.0 |
| KGOBDBOM_15 | 0.0 | 1.0 | 0.0 |
| KGOBDBOM_16 | 0.0 | 1.0 | 0.0 |
| KGOBDBOM_17 | 0.0 | 1.0 | 0.0 |
| KGOBDBOM_18 | 0.0 | 1.0 | 0.0 |
| KGOBDBOM_19 | 0.0 | 1.0 | 0.0 |
| KGOBDBOM_20 | 1.0 | 0.0 | 1.0 |
| KGOBDBOM_21 | 0.0 | 1.0 | 0.0 |
| KGOBDBOM_22 | 0.0 | 1.0 | 0.0 |
| KGOBDBOM_23 | 0.0 | 1.0 | 0.0 |
| KGOBDBOM_24 | 0.0 | 1.0 | 0.0 |
| KGOBDBOM_25 | 0.0 | 1.0 | 0.0 |
| KGOBDBOM_26 | 0.0 | 1.0 | 0.0 |
| KGOBDBOM_27 | 0.0 | 1.0 | 0.0 |
| KGOBDBOM_28 | 0.0 | 1.0 | 0.0 |
| KGOBDBOM_29 | 0.0 | 1.0 | 0.0 |
| KGOBDBOM_30 | 0.0 | 1.0 | 0.0 |
| KGOBDBOM_31 | 0.0 | 1.0 | 0.0 |
| KGOBDBOM_32 | 0.0 | 1.0 | 0.0 |
| KGOBDBOM_33 | 1.0 | 0.0 | 1.0 |
| KGOBDBOM_34 | 0.0 | 1.0 | 0.0 |
| KGOBDBOM_35 | 0.0 | 1.0 | 0.0 |
| KGOBDBOM_36 | 1.0 | 0.0 | 1.0 |
| KGOBDBOM_37 | 1.0 | 0.0 | 1.0 |
| KGOBDBOM_38 | 0.0 | 1.0 | 0.0 |
| KGOBDBOM_39 | 1.0 | 0.0 | 1.0 |
| KGOBDBOM_40 | 1.0 | 0.0 | 1.0 |
| KGOBDBOM_41 | 0.0 | 1.0 | 0.0 |
| KGOBDBOM_42 | 1.0 | 0.0 | 1.0 |
| KGOBDBOM_43 | 0.0 | 1.0 | 0.0 |
| KGOBDBOM_44 | 1.0 | 0.0 | 1.0 |
| KGOBDBOM_45 | 0.0 | 1.0 | 0.0 |
| KGOBDBOM_46 | 0.0 | 1.0 | 0.0 |
| KGOBDBOM_47 | 1.0 | 0.0 | 1.0 |
| KGOBDBOM_48 | 1.0 | 0.0 | 1.0 |
| KGOBDBOM_49 | 1.0 | 0.0 | 1.0 |
| KGOBDBOM_51 | 1.0 | 0.0 | 1.0 |
| KGOBDBOM_52 | 1.0 | 0.0 | 1.0 |
| KGOBDBOM_54 | 1.0 | 0.0 | 1.0 |
| KGOBDBOM_55 | 1.0 | 0.0 | 1.0 |
| KGOBDBOM_56 | 0.0 | 1.0 | 0.0 |
| KGOBDBOM_57 | 1.0 | 0.0 | 1.0 |
| KGOBDBOM_67 | 0.0 | 1.0 | 0.0 |
| KGOBDBOM_78 | 0.0 | 1.0 | 0.0 |
| KGOBDBOM_89 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| KGOBDBOM_67 | 114050 | 114706 | False | Unknown | VOG6282 |
| KGOBDBOM_89 | 36446 | 46552 | False | Siphoviridae | VOG7238, |
Phigaro v2.4.0 (Database: Jan. 2024 release)