Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 3 | 0 | 0 | 3.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| CMFGLHCB_142 | 57785 | 59710 | tet(Q) | ARO:3000191 | tet(Q) | 96.41 | 97.56 | Z21523.1 |
| CMFGLHCB_140 | 36181 | 37386 | Mef(En2) | ARO:3004659 | Mef(En2) | 99.50 | 100.00 | AF251288.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| CMFGLHCB_142 | 57785 | 59710 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 99.84 | 100.00 | L33696 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| CMFGLHCB_140 | 35647 | 36156 | lnu(AN2) | lincosamide nucleotidyltransferase Lnu(AN2) | EXACTX | 100.00 | 100.00 | WP_004308783.1 |
| CMFGLHCB_142 | 57785 | 59707 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 99.53 | 100.00 | WP_063856407.1 |
| CMFGLHCB_140 | 36184 | 37386 | mef(En2) | macrolide efflux MFS transporter Mef(En2) | BLASTX | 99.50 | 100.00 | WP_063853729.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| CMFGLHCB_33 | 445 | 1025 | repUS2 | 584 / 681 | 80.48 | BFU30316 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| CMFGLHCB_1 | 0.0 | 1.0 | 0.0 |
| CMFGLHCB_2 | 0.0 | 1.0 | 0.0 |
| CMFGLHCB_3 | 1.0 | 0.0 | 1.0 |
| CMFGLHCB_4 | 1.0 | 0.0 | 1.0 |
| CMFGLHCB_5 | 1.0 | 0.0 | 1.0 |
| CMFGLHCB_6 | 1.0 | 0.0 | 1.0 |
| CMFGLHCB_7 | 1.0 | 0.0 | 1.0 |
| CMFGLHCB_8 | 0.0 | 1.0 | 0.0 |
| CMFGLHCB_9 | 0.0 | 1.0 | 0.0 |
| CMFGLHCB_10 | 1.0 | 0.0 | 1.0 |
| CMFGLHCB_11 | 1.0 | 0.0 | 1.0 |
| CMFGLHCB_12 | 1.0 | 0.0 | 1.0 |
| CMFGLHCB_13 | 0.0 | 1.0 | 0.0 |
| CMFGLHCB_14 | 0.0 | 1.0 | 0.0 |
| CMFGLHCB_15 | 1.0 | 0.0 | 1.0 |
| CMFGLHCB_16 | 0.0 | 1.0 | 0.0 |
| CMFGLHCB_17 | 1.0 | 0.0 | 1.0 |
| CMFGLHCB_18 | 0.0 | 1.0 | 0.0 |
| CMFGLHCB_19 | 1.0 | 0.0 | 1.0 |
| CMFGLHCB_20 | 1.0 | 0.0 | 1.0 |
| CMFGLHCB_21 | 1.0 | 0.0 | 1.0 |
| CMFGLHCB_22 | 0.0 | 1.0 | 0.0 |
| CMFGLHCB_23 | 1.0 | 0.0 | 1.0 |
| CMFGLHCB_24 | 0.0 | 1.0 | 0.0 |
| CMFGLHCB_25 | 1.0 | 0.0 | 1.0 |
| CMFGLHCB_26 | 1.0 | 0.0 | 1.0 |
| CMFGLHCB_27 | 1.0 | 0.0 | 1.0 |
| CMFGLHCB_28 | 0.0 | 1.0 | 0.0 |
| CMFGLHCB_30 | 1.0 | 0.0 | 1.0 |
| CMFGLHCB_31 | 1.0 | 0.0 | 1.0 |
| CMFGLHCB_32 | 1.0 | 0.0 | 1.0 |
| CMFGLHCB_33 | 1.0 | 0.0 | 1.0 |
| CMFGLHCB_35 | 0.0 | 1.0 | 0.0 |
| CMFGLHCB_46 | 0.0 | 1.0 | 0.0 |
| CMFGLHCB_57 | 0.0 | 1.0 | 0.0 |
| CMFGLHCB_68 | 0.0 | 1.0 | 0.0 |
| CMFGLHCB_79 | 0.0 | 1.0 | 0.0 |
| CMFGLHCB_89 | 0.0 | 1.0 | 0.0 |
| CMFGLHCB_100 | 0.0 | 1.0 | 0.0 |
| CMFGLHCB_110 | 0.0 | 1.0 | 0.0 |
| CMFGLHCB_111 | 0.0 | 1.0 | 0.0 |
| CMFGLHCB_122 | 0.0 | 1.0 | 0.0 |
| CMFGLHCB_125 | 0.0 | 1.0 | 0.0 |
| CMFGLHCB_126 | 0.0 | 1.0 | 0.0 |
| CMFGLHCB_127 | 0.0 | 1.0 | 0.0 |
| CMFGLHCB_128 | 0.0 | 1.0 | 0.0 |
| CMFGLHCB_129 | 0.0 | 1.0 | 0.0 |
| CMFGLHCB_130 | 0.0 | 1.0 | 0.0 |
| CMFGLHCB_131 | 0.0 | 1.0 | 0.0 |
| CMFGLHCB_132 | 0.0 | 1.0 | 0.0 |
| CMFGLHCB_133 | 0.0 | 1.0 | 0.0 |
| CMFGLHCB_134 | 0.0 | 1.0 | 0.0 |
| CMFGLHCB_135 | 0.0 | 1.0 | 0.0 |
| CMFGLHCB_136 | 0.0 | 1.0 | 0.0 |
| CMFGLHCB_137 | 0.0 | 1.0 | 0.0 |
| CMFGLHCB_138 | 0.0 | 1.0 | 0.0 |
| CMFGLHCB_139 | 0.0 | 1.0 | 0.0 |
| CMFGLHCB_140 | 0.0 | 1.0 | 0.0 |
| CMFGLHCB_141 | 0.0 | 1.0 | 0.0 |
| CMFGLHCB_142 | 0.0 | 1.0 | 0.0 |
| CMFGLHCB_143 | 0.0 | 1.0 | 0.0 |
| CMFGLHCB_144 | 0.0 | 1.0 | 0.0 |
| CMFGLHCB_145 | 0.0 | 1.0 | 0.0 |
| CMFGLHCB_146 | 0.0 | 1.0 | 0.0 |
| CMFGLHCB_147 | 0.0 | 1.0 | 0.0 |
| CMFGLHCB_148 | 0.0 | 1.0 | 0.0 |
| CMFGLHCB_149 | 0.0 | 1.0 | 0.0 |
| CMFGLHCB_150 | 0.0 | 1.0 | 0.0 |
| CMFGLHCB_151 | 0.0 | 1.0 | 0.0 |
| CMFGLHCB_152 | 0.0 | 1.0 | 0.0 |
| CMFGLHCB_153 | 0.0 | 1.0 | 0.0 |
| CMFGLHCB_154 | 0.0 | 1.0 | 0.0 |
| CMFGLHCB_155 | 0.0 | 1.0 | 0.0 |
| CMFGLHCB_156 | 0.0 | 1.0 | 0.0 |
| CMFGLHCB_157 | 0.0 | 1.0 | 0.0 |
| CMFGLHCB_158 | 0.0 | 1.0 | 0.0 |
| CMFGLHCB_159 | 1.0 | 0.0 | 1.0 |
| CMFGLHCB_160 | 0.0 | 1.0 | 0.0 |
| CMFGLHCB_161 | 0.0 | 1.0 | 0.0 |
| CMFGLHCB_162 | 0.0 | 1.0 | 0.0 |
| CMFGLHCB_163 | 0.0 | 1.0 | 0.0 |
| CMFGLHCB_164 | 0.0 | 1.0 | 0.0 |
| CMFGLHCB_165 | 0.0 | 1.0 | 0.0 |
| CMFGLHCB_166 | 0.0 | 1.0 | 0.0 |
| CMFGLHCB_167 | 0.0 | 1.0 | 0.0 |
| CMFGLHCB_168 | 0.0 | 1.0 | 0.0 |
| CMFGLHCB_169 | 1.0 | 0.0 | 1.0 |
| CMFGLHCB_170 | 1.0 | 0.0 | 1.0 |
| CMFGLHCB_171 | 0.0 | 1.0 | 0.0 |
| CMFGLHCB_172 | 0.0 | 1.0 | 0.0 |
| CMFGLHCB_173 | 0.0 | 1.0 | 0.0 |
| CMFGLHCB_174 | 0.0 | 1.0 | 0.0 |
| CMFGLHCB_175 | 0.0 | 1.0 | 0.0 |
| CMFGLHCB_176 | 0.0 | 1.0 | 0.0 |
| CMFGLHCB_177 | 0.0 | 1.0 | 0.0 |
| CMFGLHCB_178 | 0.0 | 1.0 | 0.0 |
| CMFGLHCB_179 | 0.0 | 1.0 | 0.0 |
| CMFGLHCB_180 | 0.0 | 1.0 | 0.0 |
| CMFGLHCB_181 | 0.0 | 1.0 | 0.0 |
| CMFGLHCB_182 | 0.0 | 1.0 | 0.0 |
| CMFGLHCB_183 | 0.0 | 1.0 | 0.0 |
| CMFGLHCB_184 | 0.0 | 1.0 | 0.0 |
| CMFGLHCB_185 | 0.0 | 1.0 | 0.0 |
| CMFGLHCB_186 | 1.0 | 0.0 | 1.0 |
| CMFGLHCB_187 | 0.0 | 1.0 | 0.0 |
| CMFGLHCB_188 | 0.0 | 1.0 | 0.0 |
| CMFGLHCB_189 | 0.0 | 1.0 | 0.0 |
| CMFGLHCB_190 | 0.0 | 1.0 | 0.0 |
| CMFGLHCB_191 | 0.0 | 1.0 | 0.0 |
| CMFGLHCB_192 | 0.0 | 1.0 | 0.0 |
| CMFGLHCB_193 | 0.0 | 1.0 | 0.0 |
| CMFGLHCB_194 | 0.0 | 1.0 | 0.0 |
| CMFGLHCB_195 | 0.0 | 1.0 | 0.0 |
| CMFGLHCB_196 | 0.0 | 1.0 | 0.0 |
| CMFGLHCB_197 | 0.0 | 1.0 | 0.0 |
| CMFGLHCB_198 | 0.0 | 1.0 | 0.0 |
| CMFGLHCB_199 | 0.0 | 1.0 | 0.0 |
| CMFGLHCB_200 | 0.0 | 1.0 | 0.0 |
| CMFGLHCB_201 | 0.0 | 1.0 | 0.0 |
| CMFGLHCB_202 | 1.0 | 0.0 | 1.0 |
| CMFGLHCB_203 | 0.0 | 1.0 | 0.0 |
| CMFGLHCB_204 | 0.0 | 1.0 | 0.0 |
| CMFGLHCB_205 | 1.0 | 0.0 | 1.0 |
| CMFGLHCB_206 | 1.0 | 0.0 | 1.0 |
| CMFGLHCB_207 | 1.0 | 0.0 | 1.0 |
| CMFGLHCB_209 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| No hit found | |||||
Phigaro v2.4.0 (Database: Jan. 2024 release)