Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 3 | 0 | 0 | 3.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| LGFFIGBH_114 | 29673 | 30878 | Mef(En2) | ARO:3004659 | Mef(En2) | 99.50 | 100.00 | AF251288.1 |
| LGFFIGBH_149 | 3801 | 5726 | tet(Q) | ARO:3000191 | tet(Q) | 96.41 | 97.56 | Z21523.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| LGFFIGBH_149 | 3801 | 5726 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 99.79 | 100.00 | L33696 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| LGFFIGBH_114 | 30903 | 31412 | lnu(AN2) | lincosamide nucleotidyltransferase Lnu(AN2) | EXACTX | 100.00 | 100.00 | WP_004308783.1 |
| LGFFIGBH_149 | 3804 | 5726 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 99.53 | 100.00 | WP_063856407.1 |
| LGFFIGBH_114 | 29673 | 30875 | mef(En2) | macrolide efflux MFS transporter Mef(En2) | BLASTX | 99.50 | 100.00 | WP_063853729.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| LGFFIGBH_26 | 445 | 1025 | repUS2 | 584 / 681 | 80.48 | BFU30316 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| LGFFIGBH_1 | 0.0 | 1.0 | 0.0 |
| LGFFIGBH_2 | 0.0 | 1.0 | 0.0 |
| LGFFIGBH_3 | 1.0 | 0.0 | 1.0 |
| LGFFIGBH_4 | 0.0 | 1.0 | 0.0 |
| LGFFIGBH_5 | 0.0 | 1.0 | 0.0 |
| LGFFIGBH_6 | 1.0 | 0.0 | 1.0 |
| LGFFIGBH_7 | 1.0 | 0.0 | 1.0 |
| LGFFIGBH_8 | 0.0 | 1.0 | 0.0 |
| LGFFIGBH_9 | 1.0 | 0.0 | 1.0 |
| LGFFIGBH_10 | 0.0 | 1.0 | 0.0 |
| LGFFIGBH_11 | 1.0 | 0.0 | 1.0 |
| LGFFIGBH_12 | 0.0 | 1.0 | 0.0 |
| LGFFIGBH_13 | 0.0 | 1.0 | 0.0 |
| LGFFIGBH_14 | 1.0 | 0.0 | 1.0 |
| LGFFIGBH_15 | 1.0 | 0.0 | 1.0 |
| LGFFIGBH_16 | 1.0 | 0.0 | 1.0 |
| LGFFIGBH_17 | 1.0 | 0.0 | 1.0 |
| LGFFIGBH_18 | 1.0 | 0.0 | 1.0 |
| LGFFIGBH_19 | 1.0 | 0.0 | 1.0 |
| LGFFIGBH_20 | 1.0 | 0.0 | 1.0 |
| LGFFIGBH_21 | 1.0 | 0.0 | 1.0 |
| LGFFIGBH_22 | 0.0 | 1.0 | 0.0 |
| LGFFIGBH_23 | 1.0 | 0.0 | 1.0 |
| LGFFIGBH_24 | 0.0 | 1.0 | 0.0 |
| LGFFIGBH_25 | 1.0 | 0.0 | 1.0 |
| LGFFIGBH_26 | 1.0 | 0.0 | 1.0 |
| LGFFIGBH_35 | 0.0 | 1.0 | 0.0 |
| LGFFIGBH_46 | 0.0 | 1.0 | 0.0 |
| LGFFIGBH_57 | 0.0 | 1.0 | 0.0 |
| LGFFIGBH_68 | 0.0 | 1.0 | 0.0 |
| LGFFIGBH_79 | 0.0 | 1.0 | 0.0 |
| LGFFIGBH_90 | 0.0 | 1.0 | 0.0 |
| LGFFIGBH_94 | 0.0 | 1.0 | 0.0 |
| LGFFIGBH_95 | 0.0 | 1.0 | 0.0 |
| LGFFIGBH_96 | 0.0 | 1.0 | 0.0 |
| LGFFIGBH_97 | 0.0 | 1.0 | 0.0 |
| LGFFIGBH_98 | 0.0 | 1.0 | 0.0 |
| LGFFIGBH_99 | 0.0 | 1.0 | 0.0 |
| LGFFIGBH_100 | 0.0 | 1.0 | 0.0 |
| LGFFIGBH_101 | 0.0 | 1.0 | 0.0 |
| LGFFIGBH_102 | 0.0 | 1.0 | 0.0 |
| LGFFIGBH_103 | 0.0 | 1.0 | 0.0 |
| LGFFIGBH_104 | 0.0 | 1.0 | 0.0 |
| LGFFIGBH_105 | 0.0 | 1.0 | 0.0 |
| LGFFIGBH_106 | 0.0 | 1.0 | 0.0 |
| LGFFIGBH_107 | 0.0 | 1.0 | 0.0 |
| LGFFIGBH_108 | 0.0 | 1.0 | 0.0 |
| LGFFIGBH_109 | 0.0 | 1.0 | 0.0 |
| LGFFIGBH_110 | 0.0 | 1.0 | 0.0 |
| LGFFIGBH_111 | 0.0 | 1.0 | 0.0 |
| LGFFIGBH_112 | 0.0 | 1.0 | 0.0 |
| LGFFIGBH_113 | 0.0 | 1.0 | 0.0 |
| LGFFIGBH_114 | 0.0 | 1.0 | 0.0 |
| LGFFIGBH_115 | 0.0 | 1.0 | 0.0 |
| LGFFIGBH_116 | 0.0 | 1.0 | 0.0 |
| LGFFIGBH_117 | 0.0 | 1.0 | 0.0 |
| LGFFIGBH_118 | 0.0 | 1.0 | 0.0 |
| LGFFIGBH_119 | 0.0 | 1.0 | 0.0 |
| LGFFIGBH_120 | 0.0 | 1.0 | 0.0 |
| LGFFIGBH_121 | 0.0 | 1.0 | 0.0 |
| LGFFIGBH_122 | 0.0 | 1.0 | 0.0 |
| LGFFIGBH_123 | 0.0 | 1.0 | 0.0 |
| LGFFIGBH_124 | 0.0 | 1.0 | 0.0 |
| LGFFIGBH_125 | 0.0 | 1.0 | 0.0 |
| LGFFIGBH_126 | 0.0 | 1.0 | 0.0 |
| LGFFIGBH_127 | 1.0 | 0.0 | 1.0 |
| LGFFIGBH_128 | 0.0 | 1.0 | 0.0 |
| LGFFIGBH_129 | 0.0 | 1.0 | 0.0 |
| LGFFIGBH_130 | 0.0 | 1.0 | 0.0 |
| LGFFIGBH_131 | 0.0 | 1.0 | 0.0 |
| LGFFIGBH_132 | 0.0 | 1.0 | 0.0 |
| LGFFIGBH_133 | 0.0 | 1.0 | 0.0 |
| LGFFIGBH_134 | 0.0 | 1.0 | 0.0 |
| LGFFIGBH_135 | 1.0 | 0.0 | 1.0 |
| LGFFIGBH_136 | 0.0 | 1.0 | 0.0 |
| LGFFIGBH_137 | 1.0 | 0.0 | 1.0 |
| LGFFIGBH_138 | 0.0 | 1.0 | 0.0 |
| LGFFIGBH_139 | 0.0 | 1.0 | 0.0 |
| LGFFIGBH_140 | 0.0 | 1.0 | 0.0 |
| LGFFIGBH_141 | 0.0 | 1.0 | 0.0 |
| LGFFIGBH_142 | 0.0 | 1.0 | 0.0 |
| LGFFIGBH_143 | 0.0 | 1.0 | 0.0 |
| LGFFIGBH_144 | 0.0 | 1.0 | 0.0 |
| LGFFIGBH_145 | 0.0 | 1.0 | 0.0 |
| LGFFIGBH_146 | 0.0 | 1.0 | 0.0 |
| LGFFIGBH_147 | 0.0 | 1.0 | 0.0 |
| LGFFIGBH_148 | 0.0 | 1.0 | 0.0 |
| LGFFIGBH_149 | 0.0 | 1.0 | 0.0 |
| LGFFIGBH_150 | 0.0 | 1.0 | 0.0 |
| LGFFIGBH_151 | 0.0 | 1.0 | 0.0 |
| LGFFIGBH_152 | 0.0 | 1.0 | 0.0 |
| LGFFIGBH_153 | 1.0 | 0.0 | 1.0 |
| LGFFIGBH_154 | 1.0 | 0.0 | 1.0 |
| LGFFIGBH_155 | 0.0 | 1.0 | 0.0 |
| LGFFIGBH_156 | 0.0 | 1.0 | 0.0 |
| LGFFIGBH_157 | 0.0 | 1.0 | 0.0 |
| LGFFIGBH_158 | 0.0 | 1.0 | 0.0 |
| LGFFIGBH_159 | 0.0 | 1.0 | 0.0 |
| LGFFIGBH_160 | 0.0 | 1.0 | 0.0 |
| LGFFIGBH_161 | 0.0 | 1.0 | 0.0 |
| LGFFIGBH_162 | 0.0 | 1.0 | 0.0 |
| LGFFIGBH_163 | 0.0 | 1.0 | 0.0 |
| LGFFIGBH_164 | 0.0 | 1.0 | 0.0 |
| LGFFIGBH_165 | 0.0 | 1.0 | 0.0 |
| LGFFIGBH_166 | 0.0 | 1.0 | 0.0 |
| LGFFIGBH_167 | 0.0 | 1.0 | 0.0 |
| LGFFIGBH_168 | 0.0 | 1.0 | 0.0 |
| LGFFIGBH_169 | 1.0 | 0.0 | 1.0 |
| LGFFIGBH_170 | 0.0 | 1.0 | 0.0 |
| LGFFIGBH_171 | 1.0 | 0.0 | 1.0 |
| LGFFIGBH_172 | 0.0 | 1.0 | 0.0 |
| LGFFIGBH_173 | 0.0 | 1.0 | 0.0 |
| LGFFIGBH_174 | 1.0 | 0.0 | 1.0 |
| LGFFIGBH_175 | 1.0 | 0.0 | 1.0 |
| LGFFIGBH_176 | 1.0 | 0.0 | 1.0 |
| LGFFIGBH_178 | 1.0 | 0.0 | 1.0 |
| LGFFIGBH_179 | 0.0 | 1.0 | 0.0 |
| LGFFIGBH_180 | 1.0 | 0.0 | 1.0 |
| LGFFIGBH_181 | 1.0 | 0.0 | 1.0 |
| LGFFIGBH_182 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| No hit found | |||||
Phigaro v2.4.0 (Database: Jan. 2024 release)